feat(python): support python 3.13

.github/workflows/nix.yml

@@ -38,11 +38,14 @@ jobs:
           - "3.10"
           - "3.11"
           - "3.12"
+          - "3.13"
         include:
           - os: ubuntu-arm64-24.04 # aarch64-linux
             python-version: "3.12"
           - os: macos-14 # aarch64-darwin
             python-version: "3.12"
+          - os: macos-14 # aarch64-darwin
+            python-version: "3.13"
     steps:
       - name: checkout
         uses: actions/checkout@v4

flake.nix

@@ -154,24 +154,26 @@
       in
       rec {
         packages = {
-          default = packages.ibis312;
+          default = packages.ibis313;
 
-          inherit (pkgs) ibis310 ibis311 ibis312
+          inherit (pkgs) ibis310 ibis311 ibis312 ibis313
             update-lock-files check-release-notes-spelling;
         };
 
         checks = {
           ibis310-pytest = pkgs.ibis310.passthru.tests.pytest;
           ibis311-pytest = pkgs.ibis311.passthru.tests.pytest;
           ibis312-pytest = pkgs.ibis312.passthru.tests.pytest;
+          ibis313-pytest = pkgs.ibis313.passthru.tests.pytest;
         };
 
         devShells = rec {
           ibis310 = mkDevShell pkgs.ibisDevEnv310;
           ibis311 = mkDevShell pkgs.ibisDevEnv311;
           ibis312 = mkDevShell pkgs.ibisDevEnv312;
+          ibis313 = mkDevShell pkgs.ibisDevEnv313;
 
-          default = ibis312;
+          default = ibis313;
 
           preCommit = pkgs.mkShell {
             name = "preCommit";

nix/overlay.nix

@@ -96,10 +96,12 @@ in
   ibis310 = mkEnv pkgs.python310;
   ibis311 = mkEnv pkgs.python311;
   ibis312 = mkEnv pkgs.python312;
+  ibis313 = mkEnv pkgs.python313;
 
   ibisDevEnv310 = mkDevEnv pkgs.python310;
   ibisDevEnv311 = mkDevEnv pkgs.python311;
   ibisDevEnv312 = mkDevEnv pkgs.python312;
+  ibisDevEnv313 = mkDevEnv pkgs.python313;
 
   ibisSmallDevEnv = mkEnv'
     {
@@ -108,7 +110,7 @@ in
       };
       editable = false;
     }
-    pkgs.python312;
+    pkgs.python313;
 
   duckdb = super.duckdb.overrideAttrs (
     _: lib.optionalAttrs (stdenv.isAarch64 && stdenv.isLinux) {
@@ -149,7 +151,7 @@ in
   gen-examples = pkgs.writeShellApplication {
     name = "gen-examples";
     runtimeInputs = [
-      pkgs.ibisDevEnv312
+      pkgs.ibisDevEnv313
       (pkgs.rWrapper.override {
         packages = with pkgs.rPackages; [
           Lahman

nix/pyproject-overrides.nix

@@ -30,6 +30,9 @@ let
     toolz.setuptools = [ ];
     typing-extensions.flit-core = [ ];
     debugpy.setuptools = [ ];
+    google-crc32c.setuptools = [ ];
+    lz4.setuptools = [ ];
+    snowflake-connector-python.setuptools = [ ];
   } // lib.optionalAttrs stdenv.hostPlatform.isDarwin {
     duckdb = {
       setuptools = [ ];
@@ -49,6 +52,56 @@ in
       pkgs.arrow-cpp
     ];
   });
+
+  scipy = prev.scipy.overrideAttrs (attrs: {
+    nativeBuildInputs = attrs.nativeBuildInputs or [ ] ++ [
+      final.meson-python
+      final.pyproject-metadata
+      final.cython
+      final.packaging
+      final.numpy
+      final.pybind11
+      final.pythran
+      pkgs.pkg-config
+      pkgs.ninja
+      pkgs.meson
+      pkgs.gfortran
+      pkgs.cmake
+    ];
+  });
+
+  scikit-learn = prev.scikit-learn.overrideAttrs (attrs: {
+    nativeBuildInputs = attrs.nativeBuildInputs or [ ] ++ [
+      final.meson-python
+      final.pyproject-metadata
+      final.cython
+      final.packaging
+      final.numpy
+      final.scipy
+      pkgs.ninja
+      pkgs.meson
+      pkgs.gfortran
+    ];
+  });
+
+  pyproj = prev.pyproj.overrideAttrs (attrs: {
+    nativeBuildInputs = attrs.nativeBuildInputs or [ ] ++ [
+      final.setuptools
+      final.cython
+      pkgs.proj
+    ];
+    PROJ_DIR = "${lib.getBin pkgs.proj}";
+    PROJ_INCDIR = "${lib.getDev pkgs.proj}";
+  });
+
+  pyogrio = prev.pyogrio.overrideAttrs (attrs: {
+    nativeBuildInputs = attrs.nativeBuildInputs or [ ] ++ [
+      final.setuptools
+      final.versioneer
+      final.cython
+      pkgs.gdal
+    ];
+  });
 }) // lib.mapAttrs (name: spec: addBuildSystems prev.${name} spec) buildSystemOverrides // {
   mysqlclient = prev.mysqlclient.overrideAttrs (attrs: {
     nativeBuildInputs = attrs.nativeBuildInputs or [ ] ++ [ final.setuptools ];