Gaussian process optimization using GPy. Performs global optimization with different acquisition functions. Among other functionalities, it is possible to use GPyOpt to optimize physical experiments (sequentially or in batches) and tune the parameters of Machine Learning algorithms. It is able to handle large data sets via sparse Gaussian process models.
@Misc{gpyopt2016,
author = {The GPyOpt authors},
title = {{GPyOpt}: A Bayesian Optimization framework in python},
howpublished = {\url{http://github.com/SheffieldML/GPyOpt}},
year = {2016}
}
The simplest way to install GPyOpt is using pip. ubuntu users can do:
sudo apt-get install python-pip
pip install gpyoptIf you'd like to install from source, or want to contribute to the project (e.g. by sending pull requests via github), read on. Clone the repository in GitHub and add it to your $PYTHONPATH.
git clone https://github.com/SheffieldML/GPyOpt.git
cd GPyOpt
python setup.py develop- GPy
- paramz
- numpy
- scipy
- matplotlib
- DIRECT (optional)
- cma (optional)
- pyDOE (optional)
- sobol_seq (optional)
You can install dependencies by running:
pip install -r requirements.txt
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BBSRC Project No BB/K011197/1 "Linking recombinant gene sequence to protein product manufacturability using CHO cell genomic resources"
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See GPy funding Acknowledgements