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Issues list

Refactor sc-atac-seq-pipeline repository
#60 opened May 15, 2024 by SFD5311
1
2 Motif Analysis CWL Steps, Neither Used?
#59 opened May 15, 2024 by SFD5311
Empty frags files in sciATAC and snareseq data
#49 opened Aug 30, 2023 by SFD5311
Split run_ArchR_analysis.R for multiome processing
#48 opened Apr 17, 2023 by mruffalo
1
@seschultz @pennycuda
Improve reporting of too few cells passing filtering criteria
#47 opened Apr 21, 2022 by mruffalo
@wshands
Update sc_atac_seq_prep_process_analyze.cwl to provide expected outputs
#45 opened Apr 15, 2022 by mccalluc
Write anonymized BAM file with BAMboozle tool
#44 opened Feb 4, 2022 by mruffalo
Write genome build and other annotations as machine-readable outputs to each pipeline run
#43 opened Jan 21, 2022 by mruffalo
Matrix decomposition failure in smoothing cell-by-gene matrix
#42 opened Dec 1, 2021 by mruffalo
Failure in computing Jaccard similarity matrix when too many cells
#41 opened Sep 16, 2021 by mruffalo
Tweak parameters (filtering, bin size, etc.) for Stanford snATAC-seq processing
#38 opened Jul 15, 2021 by mruffalo
ProTip! Adding no:label will show everything without a label.