Increase timeout for azimuth http requests

hubmapconsortium · Mar 4, 2024 · af0f051 · af0f051
1 parent e8af375
commit af0f051
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/containers/azimuth/context/run_azimuth.R b/containers/azimuth/context/run_azimuth.R
@@ -9,6 +9,7 @@ matrix_path <- args[1]
 reference <- args[2]
 
 # Annotate
+options(timeout=60 * 60)
 output_data <- RunAzimuth(matrix_path, reference=reference)
 
 # Save and convert to h5ad