Remove tonsil from azimuth until we can upgrade seurat #110

	name: Build Containers

	on:
	push:
	branches: ["main"]

	env:
	REGISTRY: ghcr.io

	jobs:
	build-and-push:
	runs-on: ubuntu-latest
	permissions:
	contents: read
	packages: write
	strategy:
	matrix:
	container:
	[
	azimuth,
	celltypist,
	crosswalking,
	extract-summary,
	gene-expression,
	popv,
	]

	steps:
	- name: Checkout repository
	uses: actions/checkout@v2

	- name: Set up Docker Buildx
	uses: docker/setup-buildx-action@v2

	- name: Log in to the Container registry
	uses: docker/login-action@v2
	with:
	registry: ${{ env.REGISTRY }}
	username: ${{ github.actor }}
	password: ${{ secrets.GITHUB_TOKEN }}

	- name: Extract metadata (tags, labels) for Docker
	id: meta
	uses: docker/metadata-action@v4
	with:
	images: ${{ env.REGISTRY }}/${{ github.repository }}/${{ matrix.container }}

	- name: Copy shared folders
	run: \|
	echo containers/*/context \| xargs -n 1 cp -rf src/

	- name: Build and push Docker image
	uses: docker/build-push-action@v4
	with:
	context: ./containers/${{ matrix.container }}
	platforms: linux/amd64
	push: true
	tags: ${{ steps.meta.outputs.tags }}
	labels: ${{ steps.meta.outputs.labels }}

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