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add pig fasta and gtf
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hoelzer committed Feb 2, 2024
1 parent bfce097 commit 90375cc
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion modules/annotationGet.nf
Original file line number Diff line number Diff line change
@@ -31,7 +31,7 @@ process annotationGet {
"""
wget ftp://ftp.ensembl.org/pub/release-111/gtf/sus_scrofa/Sus_scrofa.Sscrofa11.1.111.gtf.gz
gunzip -f Sus_scrofa.Sscrofa11.1.111.gtf.gz
mv Sus_scrofa.Sscrofa11.1.111.gtf.gz ${species}.gtf
mv Sus_scrofa.Sscrofa11.1.111.gtf ${species}.gtf
"""
else if (species == 'eco')
"""

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