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update doublet score info #303

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merged 5 commits into from
Jun 7, 2021
Merged

update doublet score info #303

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8107819
update doublet score info
alexvpickering Jun 2, 2021
44a9697
update text
alexvpickering Jun 3, 2021
088a005
more pithy
alexvpickering Jun 3, 2021
d574f12
update text based on Vicky's comment
alexvpickering Jun 7, 2021
3c42fc8
add for each sample
alexvpickering Jun 7, 2021
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2 changes: 1 addition & 1 deletion src/pages/experiments/[experimentId]/data-processing/index.jsx
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Expand Up @@ -272,7 +272,7 @@ const DataProcessingPage = ({ experimentId, experimentData, route }) => {
{
key: 'doubletScores',
name: 'Doublet filter',
description: 'Droplets may contain more than one cell. In such cases, it is not possible to distinguish which reads came from which cell. Such “cells” cause problems in the downstream analysis as they appear as an intermediate type. “Cells” with a high probability of being a doublet should be excluded. The probability of being a doublet is calculated using ‘scDblFinder’. The cut-off is typically set around 0.5.',
description: <span>Droplets may contain more than one cell. In such cases, it is not possible to distinguish which reads came from which cell. Such “cells” cause problems in the downstream analysis as they appear as an intermediate type. “Cells” with a high probability of being a doublet should be excluded. The probability of being a doublet is calculated using ‘scDblFinder’. For each sample, the default threshold tries to minimize both the deviation in the expected number of doublets and the error of a trained classifier. For more details see <a href="https://bioconductor.org/packages/devel/bioc/vignettes/scDblFinder/inst/doc/scDblFinder.html#thresholding" target="_blank">scDblFinder thresholding</a>.</span>,
multiSample: true,
render: (key) => (
<SingleComponentMultipleDataContainer
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