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init sce upload; rename seurat pipeline to obj2s #1933

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init sce upload; rename seurat pipeline to obj2s

init sce upload; rename seurat pipeline to obj2s #1933

Triggered via pull request September 17, 2024 20:05
@alexvpickeringalexvpickering
opened #1000
add-sce-upload
Status Failure
Total duration 23s
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FileUploadModal > drag and drop fails with valid Seurat file when pre-existing Seurat file exists for experiment: src/__test__/components/data-management/FileUploadModal.test.jsx#L319
Error: expect(jest.fn()).toHaveBeenCalledWith(...expected) Expected: "error", undefined Received: "error", "Please remove existing rds file before uploading a new one." Number of calls: 1 at Object.toHaveBeenCalledWith (/home/runner/work/ui/ui/src/__test__/components/data-management/FileUploadModal.test.jsx:363:25)
ExperimentUpdatesHandler > Triggers properly for OBJ2S updates : src/__test__/utils/experimentUpdatesHandler.test.js#L134
Error: expect(received).toMatchSnapshot() Snapshot name: `ExperimentUpdatesHandler Triggers properly for OBJ2S updates 1` New snapshot was not written. The update flag must be explicitly passed to write a new snapshot. This is likely because this test is run in a continuous integration (CI) environment in which snapshots are not written by default. Received: [ "testae48e318dab9a1bd0bexperiment", { "seurat": { "status": "RUNNING", }, }, ] at Object.toMatchSnapshot (/home/runner/work/ui/ui/src/__test__/utils/experimentUpdatesHandler.test.js:142:27) at Promise.then.completed (/home/runner/work/ui/ui/node_modules/jest-circus/build/utils.js:298:28) at new Promise (<anonymous>) at callAsyncCircusFn (/home/runner/work/ui/ui/node_modules/jest-circus/build/utils.js:231:10) at _callCircusTest (/home/runner/work/ui/ui/node_modules/jest-circus/build/run.js:316:40) at processTicksAndRejections (internal/process/task_queues.js:95:5) at _runTest (/home/runner/work/ui/ui/node_modules/jest-circus/build/run.js:252:3) at _runTestsForDescribeBlock (/home/runner/work/ui/ui/node_modules/jest-circus/build/run.js:126:9) at _runTestsForDescribeBlock (/home/runner/work/ui/ui/node_modules/jest-circus/build/run.js:121:9) at run (/home/runner/work/ui/ui/node_modules/jest-circus/build/run.js:71:3) at runAndTransformResultsToJestFormat (/home/runner/work/ui/ui/node_modules/jest-circus/build/legacy-code-todo-rewrite/jestAdapterInit.js:122:21) at jestAdapter (/home/runner/work/ui/ui/node_modules/jest-circus/build/legacy-code-todo-rewrite/jestAdapter.js:79:19) at runTestInternal (/home/runner/work/ui/ui/node_modules/jest-runner/build/runTest.js:367:16) at runTest (/home/runner/work/ui/ui/node_modules/jest-runner/build/runTest.js:444:34) at Object.worker (/home/runner/work/ui/ui/node_modules/jest-runner/build/testWorker.js:106:12)
ExperimentUpdatesHandler > Triggers properly for OBJ2S updates : src/__test__/utils/experimentUpdatesHandler.test.js#L148
Error: expect(received).toMatchSnapshot() Snapshot name: `ExperimentUpdatesHandler Triggers properly for OBJ2S updates 2` New snapshot was not written. The update flag must be explicitly passed to write a new snapshot. This is likely because this test is run in a continuous integration (CI) environment in which snapshots are not written by default. Received: [ "testae48e318dab9a1bd0bexperiment", { "seurat": { "status": "RUNNING", }, }, ] at Object.toMatchSnapshot (/home/runner/work/ui/ui/src/__test__/utils/experimentUpdatesHandler.test.js:156:27) at Promise.then.completed (/home/runner/work/ui/ui/node_modules/jest-circus/build/utils.js:298:28) at new Promise (<anonymous>) at callAsyncCircusFn (/home/runner/work/ui/ui/node_modules/jest-circus/build/utils.js:231:10) at _callCircusTest (/home/runner/work/ui/ui/node_modules/jest-circus/build/run.js:316:40) at processTicksAndRejections (internal/process/task_queues.js:95:5) at _runTest (/home/runner/work/ui/ui/node_modules/jest-circus/build/run.js:252:3) at _runTestsForDescribeBlock (/home/runner/work/ui/ui/node_modules/jest-circus/build/run.js:126:9) at _runTestsForDescribeBlock (/home/runner/work/ui/ui/node_modules/jest-circus/build/run.js:121:9) at run (/home/runner/work/ui/ui/node_modules/jest-circus/build/run.js:71:3) at runAndTransformResultsToJestFormat (/home/runner/work/ui/ui/node_modules/jest-circus/build/legacy-code-todo-rewrite/jestAdapterInit.js:122:21) at jestAdapter (/home/runner/work/ui/ui/node_modules/jest-circus/build/legacy-code-todo-rewrite/jestAdapter.js:79:19) at runTestInternal (/home/runner/work/ui/ui/node_modules/jest-runner/build/runTest.js:367:16) at runTest (/home/runner/work/ui/ui/node_modules/jest-runner/build/runTest.js:444:34) at Object.worker (/home/runner/work/ui/ui/node_modules/jest-runner/build/testWorker.js:106:12)
DownloadDataButton > Downloads processed matrix properly: src/__test__/components/data-management/DownloadDataButton.test.jsx#L173
Error: expect(received).toMatchSnapshot() Snapshot name: `DownloadDataButton Downloads processed matrix properly 1` - Snapshot - 1 + Received + 1 @@ -18,11 +18,11 @@ ], [ "testae48e318dab9a1bd0bexperiment-0", { "embeddingMethod": "umap", - "isSeurat": false, + "isObj2s": false, "name": "DownloadAnnotSeuratObject", }, [Function], [Function], { at Object.toMatchSnapshot (/home/runner/work/ui/ui/src/__test__/components/data-management/DownloadDataButton.test.jsx:202:34)