ensure visium version

Signed-off-by: Alex Pickering <[email protected]>
hms-dbmi-cellenics · Nov 19, 2024 · fac6a68 · fac6a68
1 parent c05fbd7
commit fac6a68
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/pipeline-runner/R/obj2s-2-load_obj2s_file.R b/pipeline-runner/R/obj2s-2-load_obj2s_file.R
@@ -187,11 +187,11 @@ reconstruct_seurat_spatial <- function(dataset_fpath) {
     image_names <- Seurat::Images(user_scdata)
     for (image_name in image_names) {
 
-      # TODO: ensure class of image can be handled
-      # stopifnot(class(image) %in% c('VisiumV2', 'VisiumV1'))
-
       image <- user_scdata@images[[image_name]]
 
+      # ensure class of image can be handled
+      stopifnot(class(image) %in% c('VisiumV2', 'VisiumV1'))
+
       check_type_is_safe(image)
       scdata@images[[image_name]] <- image
     }