install ome-zarr and zarr

Signed-off-by: Alex Pickering <[email protected]>
hms-dbmi-cellenics · Oct 30, 2024 · c167934 · c167934
1 parent ef8e545
commit c167934
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/pipeline-runner/Dockerfile b/pipeline-runner/Dockerfile
@@ -72,7 +72,7 @@ RUN echo ".libPaths(c('$RENV_LIB', .libPaths()))" >> $(R RHOME)/etc/Rprofile.sit
 # install python packages in virtualenv
 ENV WORKON_HOME=/src/.virtualenvs
 RUN R -q -e "reticulate::virtualenv_create('r-reticulate', python='$(which python3)')" && \
-    R -q -e "reticulate::virtualenv_install('r-reticulate', c('geosketch==1.2', 'scanorama==1.7.3', 'numpy<2', 'anndata==0.10.6'), pip_options='--no-cache-dir')"
+    R -q -e "reticulate::virtualenv_install('r-reticulate', c('geosketch==1.2', 'scanorama==1.7.3', 'numpy<2', 'anndata==0.10.6', 'ome-zarr==0.9.0', 'zarr==2.18.3'), pip_options='--no-cache-dir')"
 
 # ---------------------------------------------------
 # PRODUCTION BUILD