Fix fast mnn (#75)

* Sample ids property sent as list instead of string * Add FastMNN * Restore 5_Upload-to-aws
hms-dbmi-cellenics · May 31, 2021 · 503938d · 503938d
1 parent 7b78e3c
commit 503938d
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/pipeline-runner/src/data-ingest/4_Prepare_experiment.r b/pipeline-runner/src/data-ingest/4_Prepare_experiment.r
@@ -350,7 +350,8 @@ task <- function(input,pipeline_config){
     config.dataIntegration <- list(auto="false", 
         dataIntegration = list( method = identified.method , 
                             methodSettings = list(seuratv4=list(numGenes=2000, normalisation="logNormalize"), 
-                                                unisample=list(numGenes=2000, normalisation="logNormalize"))),
+                                                unisample=list(numGenes=2000, normalisation="logNormalize"),
+                                                fastmnn=list(numGenes=2000, normalisation="logNormalize"))),
         dimensionalityReduction = list(method = "rpca", numPCs = 30, excludeGeneCategories = c())
     )