An efficient gene regulatory network inference algorithm for early Drosophila melanogaster embryogenesis
In submission.
git clone https://github.com/hmatsu1226/GRN_linearRD
cd GRN_linearRD
Or download from "Download ZIP" button and unzip it.
Rscript GRN_linearRD.R <Input_file> <Output_file1> <Output_file2> <s>
- Input_file : G x S matrix of expression data; G is the number of gene, S is the number of position
- Output_file1 : Inferred W.
- Output_file2 : Inferred A (-W*W).
- s : The size of small space step (delta s).
Rscript GRN_linearRD.R data/data_dm.txt W_dm.txt A_dm.txt 0.001
The smoothed gap gene expression data. The original expression data is downloaded from SuperFly (http://superfly.crg.eu).
The smoothed gap gene data (hb, Kr, gt, and kni) of Drosophila melanogaster.
The smoothed gap gene data (hb, Kr, gt, and knl) of Clogmia albipunctata.
Copyright (c) 2017 Hirotaka Matsumoto Released under the MIT license