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Remove the "click Read Coverage" button warning
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philiptzou committed Jul 17, 2022
1 parent fbf4776 commit f711b57
Showing 1 changed file with 5 additions and 5 deletions.
Original file line number Diff line number Diff line change
Expand Up @@ -56,7 +56,7 @@ public enum HIV1ValidationMessage implements ValidationMessage {
ValidationLevel.WARNING,
"You have selected a minimal read-depth of %d. However, " +
"%d (%.1f%%) position%s in your sequence %s fewer than %d " +
"reads. Click the ‘Read Coverage’ button to review."
"reads."
),
MultipleStopCodons(
ValidationLevel.WARNING,
Expand Down Expand Up @@ -137,31 +137,31 @@ public enum HIV1ValidationMessage implements ValidationMessage {
),
NGSTooManyUnusualMutations(
ValidationLevel.SEVERE_WARNING,
"At this threshold (%.1f%%), >= 1.0%% of positions have a " +
"At this threshold (%.1f%%), 1.0%% of positions have a " +
"highly unusual mutation (defined as a prevalence <0.01%% in " +
"published group M direct PCR sequences). This indicates that " +
"there may be an unacceptably high risk that some mutations at " +
"this threshold represent sequence artifacts."
),
NGSTooManyApobecMutationsOneApobecDRM(
ValidationLevel.WARNING,
"At this threshold (%.1f%%), >=3 positions with signature " +
"At this threshold (%.1f%%), 3 positions with signature " +
"APOBEC mutations. At this threshold, the sequence also contains " +
"one drug-resistance mutation that could be caused by " +
"APOBEC-mediated G-to-A hypermutation (%s). This " +
"DRM therefore should be considered possible sequence artifacts."
),
NGSTooManyApobecMutationsMultipleApobecDRMs(
ValidationLevel.WARNING,
"At this threshold (%.1f%%), >=3 positions with signature " +
"At this threshold (%.1f%%), 3 positions with signature " +
"APOBEC mutations. At this threshold, the sequence also contains " +
"%d drug-resistance mutations that could be caused by " +
"APOBEC-mediated G-to-A hypermutation (%s). These " +
"DRMs therefore should be considered possible sequence artifacts."
),
NGSTooManyApobecMutationsNoApobecDRM(
ValidationLevel.WARNING,
"At this threshold (%.1f%%), >=3 positions with signature " +
"At this threshold (%.1f%%), 3 positions with signature " +
"APOBEC mutations. At this threshold, the sequence contains no" +
"drug-resistance mutations that could be caused by " +
"APOBEC-mediated G-to-A hypermutation."
Expand Down

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