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* Refactor manifest file handling in cli (#3186)
* Create the ManifestReader class for handling configuraton data used by
the epicli
* Rename all of the manifest variables to input/output_manifest
Is your feature request related to a problem? Please describe.
Describe the solution you'd like
Create unified mechanism for manifest handling across all cli/src/commands.
Describe alternatives you've considered
Additional context
DoD checklist
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