Update version to 0.0.6 #169
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| # This file is based on examples in | |
| # https://docs.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: CI | |
| on: [push, pull_request] | |
| jobs: | |
| CI: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| # If os = macos-latest, the extension builds ok, but there is a seg fault when trying to use it. | |
| os: [ubuntu-latest] | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| use-pip: [yes-pip, no-pip] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| # First print out lots of information. We do this in separate | |
| # "name" blocks because otherwise the output gets mixed together | |
| # in the github actions log. | |
| - name: PWD | |
| run: pwd | |
| - name: apt-get any needed packages | |
| if: "contains(matrix.os, 'ubuntu')" | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y build-essential gfortran openmpi-bin libopenmpi-dev libnetcdf-dev libnetcdff-dev liblapack-dev libscalapack-mpi-dev libhdf5-openmpi-dev git | |
| # Github Actions macos environment contains gfortran-9 and gfortran-10 but not a plain gfortran. | |
| # We must create a symlink so mpif90 can find a plain gfortran. | |
| - name: get any needed packages from homebrew | |
| if: "contains(matrix.os, 'macos')" | |
| run: | | |
| brew install netcdf open-mpi scalapack | |
| ln -s /usr/local/bin/gfortran-9 /usr/local/bin/gfortran | |
| - name: Print all mpi commands | |
| run: compgen -c mpi | sort | |
| - name: Confirm that gfortran can be found | |
| run: compgen -c g | sort | |
| - name: Print versions | |
| run: | | |
| which mpicc | |
| which mpiexec | |
| which mpifort | |
| which mpif90 | |
| mpicc --version | |
| mpif90 --version | |
| cmake --version | |
| which gfortran | |
| gfortran --version | |
| #mpifort --version | |
| - uses: actions/checkout@v4 | |
| # If we want submodules downloaded, uncomment the next 2 lines: | |
| #with: | |
| # submodules: true | |
| - name: ls | |
| run: ls -l | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: which python after python setup | |
| run: python --version | |
| - name: Update pip | |
| run: | | |
| python -m pip install --upgrade pip | |
| # pip install fails unless numpy is manually installed first, I think due to a problem with dependencies for f90wrap. | |
| # mpi4py is not needed for installation, but it is needed to actually do anything with the vmec python module. | |
| # scipy is not needed for the vmec module itself, but we use it for testing (to read netcdf). | |
| - name: Install python packages | |
| run: pip install numpy mpi4py scipy | |
| #- name: Install the latest version of f90wrap, more recent than the PyPI version | |
| # run: pip install git+https://github.com/jameskermode/f90wrap | |
| - name: env after adding python | |
| run: env | |
| - name: Install more python packages | |
| # If using 'pip install', these packages should be included automatically. | |
| if: "contains(matrix.use-pip, 'no-pip')" | |
| run: | | |
| pip install wheel scikit-build ninja | |
| pip install f90wrap | |
| - name: List installed python packages | |
| run: pip list | |
| - name: Set cmake_config_file.json for ubuntu | |
| if: "contains(matrix.os, 'ubuntu')" | |
| run: cp cmake/machines/ubuntu.json cmake_config_file.json | |
| - name: Set cmake_config_file.json for macos | |
| if: "contains(matrix.os, 'macos')" | |
| run: cp cmake/machines/mac_ci.json cmake_config_file.json | |
| - name: Verify new cmake_config_file.json is in place | |
| run: cat cmake_config_file.json | |
| - name: Install using pip install | |
| if: "contains(matrix.use-pip, 'yes-pip')" | |
| run: pip install -v . | |
| - name: Install using python setup.py install | |
| if: "contains(matrix.use-pip, 'no-pip')" | |
| run: python setup.py install | |
| - name: Try import | |
| run: python -c "import vmec; print('Import vmec succeeded')" | |
| - name: Run python unit tests | |
| run: ./python/run_tests_mpi |