Add BDC dbGaP IDs #285
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Add BDC dbGaP IDs #285
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This PR adds the list of dbGaP identifiers that should be loaded into BDC Dug (https://renci.atlassian.net/browse/DUG-223?focusedCommentId=10809) to this repository, as well as a Bash script that can be used to download all these files. I kept running into errors with the FTP download command, but luckily dbGaP is simultaneously available over HTTPS, so this script now uses FTP to list all the data dictionaries in an FTP folder, and then uses HTTPS (via the Requests library) to actually download the files.
I know this is pretty messy, so please don't be shy about telling me specific pieces I should unmessify further! This should be pretty similar to the previous download, but if there are any significant differences and the downloaded dbGaP files can't be ingested by Roger, let me know and I'll fix it here.