Skip to content

Commit

Permalink
Update dependencies
Browse files Browse the repository at this point in the history
  • Loading branch information
mjsteinbaugh committed Nov 26, 2018
1 parent 70c23ad commit 1c7dfd4
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions DESCRIPTION
Original file line number Diff line number Diff line change
Expand Up @@ -54,7 +54,7 @@ LazyData: false
Depends:
R (>= 3.5),
SingleCellExperiment (>= 1.2),
basejump (>= 0.8)
basejump (>= 0.8.3)
Imports:
Biobase,
BiocGenerics,
Expand All @@ -70,7 +70,7 @@ Imports:
assertive.sets,
assertive.types,
assertthat,
bcbioBase (>= 0.5),
bcbioBase (>= 0.5.3),
cowplot (>= 0.9),
dplyr (>= 0.7),
ggplot2 (>= 3.0),
Expand Down

2 comments on commit 1c7dfd4

@lintr-bot
Copy link

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

R/AllClasses.R:95:9: style: TODO comments should be removed.

# FIXME Ensure `sampleData` is moved to `colData`.
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

R/AllClasses.R:98:9: style: TODO comments should be removed.

# FIXME Switch to using basejump `checkSlotInfo()`.
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

R/deprecated.R:266:7: style: Commented code should be removed.

#     .Defunct("CellRanger::CellRanger")
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

R/globals.R:16:3: style: Commented code should be removed.

# c("violin", "ridgeline", "ecdf", "histogram", "boxplot")
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

R/plotBarcodeRanks-methods.R:20:1: style: Variable or function name should be lowerCamelCase.

plotBarcodeRanks.SingleCellExperiment <- function(object) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

R/show-methods.R:25:1: style: Variable or function name should be lowerCamelCase.

show.bcbioSingleCell <- function(object) {
^~~~~~~~~~~~~~~~~~~~

@lintr-bot
Copy link

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

R/AllClasses.R:95:9: style: TODO comments should be removed.

# FIXME Ensure `sampleData` is moved to `colData`.
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

R/AllClasses.R:98:9: style: TODO comments should be removed.

# FIXME Switch to using basejump `checkSlotInfo()`.
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

R/deprecated.R:266:7: style: Commented code should be removed.

#     .Defunct("CellRanger::CellRanger")
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

R/globals.R:16:3: style: Commented code should be removed.

# c("violin", "ridgeline", "ecdf", "histogram", "boxplot")
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

R/plotBarcodeRanks-methods.R:20:1: style: Variable or function name should be lowerCamelCase.

plotBarcodeRanks.SingleCellExperiment <- function(object) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

R/show-methods.R:25:1: style: Variable or function name should be lowerCamelCase.

show.bcbioSingleCell <- function(object) {
^~~~~~~~~~~~~~~~~~~~

Please sign in to comment.