This project will contain data processing and analysis scripts to work with fNIRS data. It is heavily modeled after existing Matlab scripts available from NITRC.
Currently, the only utility implemented is one to convert the raw data produced by the NIRx machine to a file format that the Homer2 package can use. Over time, I will port over filtering and processing capabilities currently provided by Homer2 into a native-python implementation.
This package uses both numpy and scipy
$ python setup.py install
If you receive errors about scipy not being installed after this, run
$ pip install .
This is currently a command line only application (I may eventually write a GUI wrapper, certainly feel free to contribute one sooner :-) )
$ nirx2nirs path/to/NIRS-xxxx.hdr
For more detailed usage instruction
$ nirx2nirs -h
Note that on windows the setup step should create a .exe file in your path. You may have to include that extension when running commands from the commmand line. I have not tested on Windows yet.