fix bug assert(outIndex < (int)(n_events * 2))

hasindu2008 · Jun 4, 2024 · b846980 · b846980
1 parent 9a720f0
commit b846980
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/src/align.c b/src/align.c
@@ -454,7 +454,7 @@ int32_t align(AlignedPair* out_2, char* sequence, int32_t sequence_len,
     while (curr_kmer_idx >= 0 && curr_event_idx >= 0) {
         // emit alignment
         //>>>>>>>New Repalcement begin
-        assert(outIndex < (int)(n_events * 2));
+        assert(outIndex < (int)(n_events + sequence_len));
         out_2[outIndex].ref_pos = curr_kmer_idx;
         out_2[outIndex].read_pos = curr_event_idx;
         outIndex++;

diff --git a/src/f5c.c b/src/f5c.c
@@ -722,7 +722,7 @@ void event_single(core_t* core,db_t* db, int32_t i) {
 
         //allocate memory for the next alignment step
         db->event_align_pairs[i] = (AlignedPair*)malloc(
-                    sizeof(AlignedPair) * db->et[i].n * 2); //todo : find a good heuristic to save memory
+                    sizeof(AlignedPair) * (db->et[i].n + db->read_len[i]));
         MALLOC_CHK(db->event_align_pairs[i]);
     }
     else{