Update Test.yml #76
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| name: Tests | |
| on: [push] | |
| jobs: | |
| build: | |
| runs-on: ${{matrix.os}} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| python-version: ["3.8", "3.9", "3.10"] | |
| exclude: | |
| - os: macos-latest | |
| python-version: "3.8" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Python ${{matrix.python-version}} | |
| uses: actions/setup-python@v4 | |
| with: | |
| fetch-depth: 0 | |
| persist-credentials: false | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| activate-environment: test | |
| channels: conda-forge | |
| python-version: ${{ matrix.python-version }} | |
| - name: Upgrade pip | |
| shell: bash -l {0} | |
| run: python -m pip install --upgrade pip | |
| - name: MacOS install hdf5 dependencies | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew install hdf5 | |
| export HDF5_DIR=/usr/local/ | |
| export BLOSC_DIR=/usr/local/ | |
| - name: Install Dependencies | |
| shell: bash -l {0} | |
| run: | | |
| conda install cython numpy numba nbconvert pytest jupyter scipy pandas matplotlib pytables phconvert lmfit seaborn setuptools build pyqt fretbursts h2mm-c | |
| - name: Download Files Unix | |
| if: runner.os != 'Windows' | |
| shell: bash -l {0} | |
| run: | | |
| wget -N https://zenodo.org/record/5902313/files/HP3_TE300_SPC630.hdf5 | |
| wget -N https://figshare.com/ndownloader/files/4858417 -O HairPin3_RT_400mM_NaCl_A_31_TA.hdf5 | |
| - name: Download files Windows | |
| if: runner.os == 'Windows' | |
| shell: bash -l {0} | |
| run: | | |
| curl.exe -L --output HP3_TE300_SPC630.hdf5 --url https://zenodo.org/record/5902313/files/HP3_TE300_SPC630.hdf5 | |
| curl.exe -L --output HairPin3_RT_400mM_NaCl_A_31_TA.hdf5 --url https://figshare.com/ndownloader/files/4858417 | |
| - name: Test with pytest | |
| shell: bash -l {0} | |
| run: python -m pytest |