Network refactor (#40)

* implemented Bayesian model dimensionality * Added mutual information and total dimensionality * Updated model dimensionality for tests * Tests now passing * added monte carlo error estimates * Trying to debug underestimate of dimensionality error * Made some notes about bmd error estimation. To naut. Let's just give it generous error bars * Cleaned up stats.py * Tests now up to date * bump version to 0.13.0 * Fixed documentation * remove torch dep * Removed BMD changes * removed temporary file --------- Co-authored-by: Will Handley <[email protected]>
handley-lab · Jul 26, 2024 · 662af2e · 662af2e
1 parent 65e7ec2
commit 662af2e
Show file tree

Hide file tree

Showing 6 changed files with 3 additions and 298 deletions.
diff --git a/README.rst b/README.rst
@@ -3,7 +3,7 @@ lsbi: Linear Simulation Based Inference
 =======================================
 :lsbi: Linear Simulation Based Inference
 :Author: Will Handley & David Yallup
-:Version: 0.12.2
+:Version: 0.12.3
 :Homepage: https://github.com/handley-lab/lsbi
 :Documentation: http://lsbi.readthedocs.io/
 
@@ -134,7 +134,6 @@ There are many ways you can contribute via the `GitHub repository <https://githu
 
 - You can `open an issue <https://github.com/handley-lab/lsbi/issues>`__ to report bugs or to propose new features.
 - Pull requests are very welcome. Note that if you are going to propose major changes, be sure to open an issue for discussion first, to make sure that your PR will be accepted before you spend effort coding it.
-- Adding models and data to the grid. Contact `Will Handley <mailto:[email protected]>`__ to request models or ask for your own to be uploaded.
 
 
 Questions/Comments

diff --git a/docs/source/lsbi.rst b/docs/source/lsbi.rst
@@ -16,20 +16,13 @@ lsbi.model module
    :show-inheritance:
 
 
-lsbi.network module
--------------------
-
-.. automodule:: lsbi.network
-   :members:
-   :undoc-members:
-
-
 lsbi.stats module
 -----------------
 
 .. automodule:: lsbi.stats
    :members:
    :undoc-members:
+   :show-inheritance:
 
 
 lsbi.utils module

diff --git a/lsbi/_version.py b/lsbi/_version.py
@@ -1 +1 @@
-__version__ = "0.12.2"
+__version__ = "0.12.3"
diff --git a/lsbi/network.py b/lsbi/network.py
diff --git a/pyproject.toml b/pyproject.toml
@@ -17,7 +17,6 @@ dependencies = [
     'numpy',
     'scipy',
     'matplotlib',
-    'torch',
 ]
 classifiers = [
     "Programming Language :: Python :: 3",

diff --git a/tests/test_networks.py b/tests/test_networks.py