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Optimize aligners over FASTQ fragments on-demand #162

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merged 5 commits into from
Mar 10, 2016
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@smondet smondet commented Mar 9, 2016

This change is Review on Reviewable

smondet added 5 commits March 4, 2016 18:41
This is not complete, it's a request for comments.
There is a compiler option that chooses which ones we want to run in parallel,
and whether missing the optimization should raise an exception.
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smondet commented Mar 9, 2016

It fixes #157

| other ->
begin match option with
| Some `Silent
| None -> `Not_caught
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I think the default response for when a compiler optimization cannot be made, but is expected by the user, should be noisy alert, not silent failure and continuing with the compilation.

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Ah I see; this is when there is no optimization specified. I recall my previous comment.

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ihodes commented Mar 9, 2016

LGTM!

@smondet smondet merged commit ede002e into master Mar 10, 2016
smondet added a commit that referenced this pull request Mar 10, 2016
@smondet smondet deleted the optimize-bwa-mem branch March 25, 2016 21:41
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2 participants