Genome_Assembly

Introduction

This script is able to assemble genomes(de novo) using illumina paired end reads as well as produce a QC report to assess the quality of the assembled genome

Dependencies

conda install -c bioconda fastp=0.23.2 
conda install -c bioconda skesa=2.4.0
conda install -c bioconda bwa=0.7.17
conda install -c bioconda samtools= 1.15
conda install -c bioconda qualimap=2.2.2d

How to execuet the script in terminal

1. Go into your desired directory and execute the below command
2. [fold] The folder that conatins the query files of interest

python genome_assembly.py [fold]