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adding beta mode note to readme for simtr and prancstr
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gymreklab committed Nov 20, 2023
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Expand Up @@ -88,8 +88,8 @@ TRTools includes the following tools.
* `statSTR <https://trtools.readthedocs.io/en/latest/source/statSTR.html>`_: a tool for computing various statistics on VCF files
* `compareSTR <https://trtools.readthedocs.io/en/latest/source/compareSTR.html>`_: a tool for comparing TR callsets
* `associaTR <https://trtools.readthedocs.io/en/latest/source/associaTR.html>`_: a tool for testing TR length-phenotype associations (e.g., running a TR GWAS)
* `prancSTR <https://trtools.readthedocs.io/en/latest/source/prancSTR.html>`_: a tool for identifying somatic mosacisim at TRs. Currently only compatible with HipSTR VCF files.
* `simTR <https://trtools.readthedocs.io/en/latest/source/simTR.html>`_: a tool for simulating next-generation sequencing reads from TR regions.
* `prancSTR <https://trtools.readthedocs.io/en/latest/source/prancSTR.html>`_: a tool for identifying somatic mosacisim at TRs. Currently only compatible with HipSTR VCF files. (*beta mode*)
* `simTR <https://trtools.readthedocs.io/en/latest/source/simTR.html>`_: a tool for simulating next-generation sequencing reads from TR regions. (*beta mode*)

Type :code:`<command> --help` to see a full set of options.

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