build: migrate from setup.py to pyproject.toml and set up CI #7

	name: Test with pytest

	on: [pull_request, workflow_call]

	jobs:
	build:

	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"]

	steps:
	- uses: actions/checkout@v4
	- name: Setup Python # Set Python version
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install test dependencies
	run: \|
	# $CONDA is an environment variable pointing to the root of the miniconda directory
	$CONDA/bin/conda install -y -n base -c conda-forge -c bioconda bcftools
	# Install pip and pytest
	- name: Install pytest and trtools
	run: \|
	python -m pip install --upgrade pip
	pip install pytest pytest-cov trtools
	- name: Test with pytest
	run: \|
	bcftools --help
	python -m pytest --cov=. --cov-report term-missing --doctest-modules --junitxml=junit/test-results-${{ matrix.python-version }}.xml
	- name: Upload pytest test results
	uses: actions/upload-artifact@v3
	with:
	name: pytest-results-${{ matrix.python-version }}
	path: junit/test-results-${{ matrix.python-version }}.xml
	# Use always() to always run this step to publish test results when there are test failures
	if: ${{ always() }}

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