Update controller-runtime, controller-gen and other dependencies

[iblancasa]

Closes #1090

[iblancasa]

I have to regenerate something...

[codecov-commenter]

Codecov Report

Attention: Patch coverage is 28.94737% with 27 lines in your changes missing coverage. Please review.

Project coverage is 67.73%. Comparing base (1fb2623) to head (c1b95b8).

Files with missing lines	Patch %	Lines
apis/config/v1alpha1/projectconfig_types.go	0.00%	20 Missing ⚠️
cmd/root.go	63.63%	3 Missing and 1 partial ⚠️
controllers/tempo/certrotation_controller.go	0.00%	1 Missing ⚠️
controllers/tempo/tempomonolithic_controller.go	0.00%	1 Missing ⚠️
controllers/tempo/tempostack_controller.go	0.00%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #1091      +/-   ##
==========================================
- Coverage   67.91%   67.73%   -0.18%     
==========================================
  Files         110      110              
  Lines        8728     8760      +32     
==========================================
+ Hits         5928     5934       +6     
- Misses       2503     2528      +25     
- Partials      297      298       +1     

Flag	Coverage Δ
unittests	67.73% <28.94%> (-0.18%)	⬇️

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[rubenvp8510]

@iblancasa This PR #1092 also include the version bump WDYT if we close this in favor of the one for the new layout? If we do separate PRs the conflicts will be high and hard to fix