Upgrade all dependencies, enable more warnings/lints

[kainino0x]

Will need to be reviewed in parts, because there's a giant auto-reformat in the middle (sorry)

Issue: None, cc #3126 #3128

---

Requirements for PR author:

• All missing test coverage is tracked with "TODO" or .unimplemented().
• New helpers are /** documented */ and new helper files are found in helper_index.txt.
• Test behaves as expected in a WebGPU implementation. (If not passing, explain above.)

Requirements for reviewer sign-off:

• Tests are properly located in the test tree.
• Test descriptions allow a reader to "read only the test plans and evaluate coverage completeness", and accurately reflect the test code.
• Tests provide complete coverage (including validation control cases). Missing coverage MUST be covered by TODOs.
• Helpers and types promote readability and maintainability.

When landing this PR, be sure to make any necessary issue status updates.

[zoddicus]

lgtm, thank you breaking it up into seperate diffs, made reviewing it a breeze.