Fail test for testing purposes. #35
Annotations
77 errors and 1 warning
org.gorpipe.s3.driver.ITestFilesS3Source ► testCreateDeleteListEmtpyDirectory:
drivers/src/test/java/org/gorpipe/s3/driver/ITestFilesS3Source.java#L78
Failed test found in:
drivers/build/test-results/test/TEST-org.gorpipe.s3.driver.ITestFilesS3Source.xml
Error:
java.lang.NullPointerException: Access key ID cannot be blank.
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org.gorpipe.s3.driver.ITestFilesS3Source ► testList:
drivers/src/test/java/org/gorpipe/s3/driver/ITestFilesS3Source.java#L78
Failed test found in:
drivers/build/test-results/test/TEST-org.gorpipe.s3.driver.ITestFilesS3Source.xml
Error:
java.lang.NullPointerException: Access key ID cannot be blank.
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org.gorpipe.s3.driver.ITestFilesS3Source ► testIsDirectory:
drivers/src/test/java/org/gorpipe/s3/driver/ITestFilesS3Source.java#L78
Failed test found in:
drivers/build/test-results/test/TEST-org.gorpipe.s3.driver.ITestFilesS3Source.xml
Error:
java.lang.NullPointerException: Access key ID cannot be blank.
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org.gorpipe.s3.driver.ITestFilesS3Source ► testExists:
drivers/src/test/java/org/gorpipe/s3/driver/ITestFilesS3Source.java#L78
Failed test found in:
drivers/build/test-results/test/TEST-org.gorpipe.s3.driver.ITestFilesS3Source.xml
Error:
java.lang.NullPointerException: Access key ID cannot be blank.
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org.gorpipe.s3.driver.ITestS3Source ► testS3MetaWithMetafile:
base/src/main/java/org/gorpipe/base/streams/FullRetryOutputStream.java#L37
Failed test found in:
drivers/build/test-results/test/TEST-org.gorpipe.s3.driver.ITestS3Source.xml
Error:
org.gorpipe.exceptions.GorResourceException: Close error
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org.gorpipe.s3.driver.ITestS3Source ► testS3WritePgorGord:
base/src/main/java/org/gorpipe/base/streams/FullRetryOutputStream.java#L37
Failed test found in:
drivers/build/test-results/test/TEST-org.gorpipe.s3.driver.ITestS3Source.xml
Error:
org.gorpipe.exceptions.GorResourceException: Close error
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org.gorpipe.s3.driver.ITestS3Source ► testS3NotAllBytesEx:
model/src/main/java/org/gorpipe/gor/driver/PluggableGorDriver.java#L138
Failed test found in:
drivers/build/test-results/test/TEST-org.gorpipe.s3.driver.ITestS3Source.xml
Error:
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz
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org.gorpipe.s3.driver.ITestS3Source ► testS3WriteServerMode:
base/src/main/java/org/gorpipe/base/streams/FullRetryOutputStream.java#L37
Failed test found in:
drivers/build/test-results/test/TEST-org.gorpipe.s3.driver.ITestS3Source.xml
drivers/build/test-results/test/TEST-org.gorpipe.s3.driver.ITestS3Source.xml
Error:
org.gorpipe.exceptions.GorResourceException: Close error
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org.gorpipe.s3.driver.ITestS3Source ► testS3Meta:
model/src/main/java/org/gorpipe/gor/driver/PluggableGorDriver.java#L155
Failed test found in:
drivers/build/test-results/test/TEST-org.gorpipe.s3.driver.ITestS3Source.xml
Error:
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/s3write/genes.gor
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org.gorpipe.s3.driver.ITestS3Source ► testMoreSizes:
drivers/src/test/java/org/gorpipe/s3/driver/ITestS3Source.java#L82
Failed test found in:
drivers/build/test-results/test/TEST-org.gorpipe.s3.driver.ITestS3Source.xml
Error:
java.lang.NullPointerException: Access key ID cannot be blank.
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org.gorpipe.s3.driver.ITestS3Source ► testFullStream:
drivers/src/test/java/org/gorpipe/s3/driver/ITestS3Source.java#L82
Failed test found in:
drivers/build/test-results/test/TEST-org.gorpipe.s3.driver.ITestS3Source.xml
Error:
java.lang.NullPointerException: Access key ID cannot be blank.
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test
Failed test were found and 'fail-on-error' option is set to true
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test
Process completed with exit code 1.
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org.gorpipe.s3.driver.ITestBvlMinOnS3 ► testWithDefaultCredentials:
drivers/src/test/java/org/gorpipe/s3/driver/ITestBvlMinOnS3.java#L101
Failed test found in:
drivers/build/test-results/integrationTest/TEST-org.gorpipe.s3.driver.ITestBvlMinOnS3.xml
Error:
java.lang.AssertionError
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org.gorpipe.s3.driver.ITestBvlMinOnS3 ► testWithTemporaryCredentials:
drivers/src/test/java/org/gorpipe/s3/driver/ITestBvlMinOnS3.java#L178
Failed test found in:
drivers/build/test-results/integrationTest/TEST-org.gorpipe.s3.driver.ITestBvlMinOnS3.xml
Error:
java.lang.IllegalArgumentException: Access key cannot be null.
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org.gorpipe.s3.driver.ITestBvlMinOnS3 ► testBam:
model/src/main/java/org/gorpipe/gor/driver/PluggableGorDriver.java#L138
Failed test found in:
drivers/build/test-results/integrationTest/TEST-org.gorpipe.s3.driver.ITestBvlMinOnS3.xml
Error:
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/bam/BVL_INDEX_SLC52A2.bam
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org.gorpipe.s3.driver.ITestBvlMinOnS3 ► testGor:
model/src/main/java/org/gorpipe/gor/driver/PluggableGorDriver.java#L138
Failed test found in:
drivers/build/test-results/integrationTest/TEST-org.gorpipe.s3.driver.ITestBvlMinOnS3.xml
Error:
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/derived/raw_bam_to_gor/BVL_INDEX_SLC52A2.bam.gor
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org.gorpipe.s3.driver.ITestBvlMinOnS3 ► testVcf:
model/src/main/java/org/gorpipe/gor/driver/PluggableGorDriver.java#L138
Failed test found in:
drivers/build/test-results/integrationTest/TEST-org.gorpipe.s3.driver.ITestBvlMinOnS3.xml
Error:
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/derived/raw_vcf/BVL_INDEX_SLC52A2.vcf
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org.gorpipe.s3.driver.ITestBvlMinOnS3 ► testVcfGz:
model/src/main/java/org/gorpipe/gor/driver/PluggableGorDriver.java#L138
Failed test found in:
drivers/build/test-results/integrationTest/TEST-org.gorpipe.s3.driver.ITestBvlMinOnS3.xml
Error:
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/vcf/BVL_INDEX_SLC52A2.vcf.gz
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org.gorpipe.s3.driver.ITestBvlMinOnS3 ► testGorz:
model/src/main/java/org/gorpipe/gor/driver/PluggableGorDriver.java#L138
Failed test found in:
drivers/build/test-results/integrationTest/TEST-org.gorpipe.s3.driver.ITestBvlMinOnS3.xml
Error:
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/derived/raw_bam_to_gor/BVL_INDEX_SLC52A2.bam.gorz
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org.gorpipe.s3.driver.UTestS3SeekableFile ► testBasicGorz:
model/src/main/java/org/gorpipe/gor/driver/PluggableGorDriver.java#L138
Failed test found in:
drivers/build/test-results/integrationTest/TEST-org.gorpipe.s3.driver.UTestS3SeekableFile.xml
Error:
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz
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org.gorpipe.s3.driver.UTestS3SeekableFile ► testBasicBam:
model/src/main/java/org/gorpipe/gor/driver/PluggableGorDriver.java#L138
Failed test found in:
drivers/build/test-results/integrationTest/TEST-org.gorpipe.s3.driver.UTestS3SeekableFile.xml
Error:
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/bam/BVL_FATHER_SLC52A2.bam
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org.gorpipe.s3.driver.UTestS3SeekableFile ► testBasicGor:
model/src/main/java/org/gorpipe/gor/driver/PluggableGorDriver.java#L138
Failed test found in:
drivers/build/test-results/integrationTest/TEST-org.gorpipe.s3.driver.UTestS3SeekableFile.xml
Error:
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz
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org.gorpipe.s3.driver.UTestS3SeekableFile ► testBasicSeekStream:
model/src/main/java/org/gorpipe/gor/driver/PluggableGorDriver.java#L138
Failed test found in:
drivers/build/test-results/integrationTest/TEST-org.gorpipe.s3.driver.UTestS3SeekableFile.xml
Error:
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz
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integrationTest
Process completed with exit code 1.
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integrationTest
Failed test were found and 'fail-on-error' option is set to true
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ITestBvlMinOnS3.testWithDefaultCredentials:
ITestBvlMinOnS3#L101
java.lang.AssertionError
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ITestBvlMinOnS3.testWithTemporaryCredentials:
ITestBvlMinOnS3#L178
java.lang.IllegalArgumentException: Access key cannot be null.
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ITestBvlMinOnS3.testBam:
ITestBvlMinOnS3#L1
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/bam/BVL_INDEX_SLC52A2.bam
URI: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/bam/BVL_INDEX_SLC52A2.bam
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ITestBvlMinOnS3.testGor:
ITestBvlMinOnS3#L1
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/derived/raw_bam_to_gor/BVL_INDEX_SLC52A2.bam.gor
URI: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/derived/raw_bam_to_gor/BVL_INDEX_SLC52A2.bam.gor
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ITestBvlMinOnS3.testVcf:
ITestBvlMinOnS3#L1
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/derived/raw_vcf/BVL_INDEX_SLC52A2.vcf
URI: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/derived/raw_vcf/BVL_INDEX_SLC52A2.vcf
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ITestBvlMinOnS3.testVcfGz:
ITestBvlMinOnS3#L1
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/vcf/BVL_INDEX_SLC52A2.vcf.gz
URI: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/vcf/BVL_INDEX_SLC52A2.vcf.gz
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ITestBvlMinOnS3.testGorz:
ITestBvlMinOnS3#L1
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/derived/raw_bam_to_gor/BVL_INDEX_SLC52A2.bam.gorz
URI: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/derived/raw_bam_to_gor/BVL_INDEX_SLC52A2.bam.gorz
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UTestS3SeekableFile.testBasicGorz:
UTestS3SeekableFile#L93
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz
URI: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz
Request ID: e52e860d-ded5-4715-a06e-8781d9b54f13
Query:
s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz -p chr2:1000000-1001000
Command Step: gor s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz -p chr2:1000000-1001000
Command Name: GOR
Command Index: 1
Extra info: Hostname=fv-az1429-368
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UTestS3SeekableFile.testBasicBam:
UTestS3SeekableFile#L112
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/bam/BVL_FATHER_SLC52A2.bam
URI: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/bam/BVL_FATHER_SLC52A2.bam
Request ID: e56420b4-26e0-4efa-83a9-ff9e39b70afe
Query:
s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/bam/BVL_FATHER_SLC52A2.bam -p chr8:1285160-
Command Step: gor s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/bam/BVL_FATHER_SLC52A2.bam -p chr8:1285160-
Command Name: GOR
Command Index: 1
Extra info: Hostname=fv-az1429-368
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UTestS3SeekableFile.testBasicGor:
UTestS3SeekableFile#L83
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz
URI: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz
Request ID: a1c3dea9-fa8a-49cf-88f2-089f3f7aeeb2
Query:
s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz -p chr2:1000000-1001000
Command Step: gor s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz -p chr2:1000000-1001000
Command Name: GOR
Command Index: 1
Extra info: Hostname=fv-az1429-368
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UTestS3SeekableFile.testBasicSeekStream:
UTestS3SeekableFile#L102
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz
URI: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz
Request ID: 67817ad9-f112-4402-b73a-0a5fc0998371
Query:
gor s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz -p chr2:1000000- | top 100000 | group chrom -count
Command Step: gor s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz -p chr2:1000000-
Command Name: GOR
Command Index: 1
Extra info: Hostname=fv-az1429-368
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ITestS3Shared.testProjectWriteUserDataServer:
ITestS3Shared#L1
org.gorpipe.exceptions.GorResourceException: Close error
URI:
Cause: Failed to put data into S3 Client object
Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
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ITestS3Shared.testProjectSharedFileRead:
ITestS3Shared#L244
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/shared/BVL_FATHER_SLC52A2.vcf.gz.gorz
URI: s3://gdb-unit-test-data/shared/BVL_FATHER_SLC52A2.vcf.gz.gorz
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ITestS3Shared.testProjectWriteUserDataCLI:
ITestS3Shared#L1
org.gorpipe.exceptions.GorResourceException: Close error
URI:
Cause: Failed to put data into S3 Client object
Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
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ITestS3Shared.testGlobalSharedFileRead:
ITestS3Shared#L276
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/shared/BVL_FATHER_SLC52A2.vcf.gz.gorz
URI: s3://gdb-unit-test-data/shared/BVL_FATHER_SLC52A2.vcf.gz.gorz
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ITestS3Shared.testProjectRead:
ITestS3Shared#L147
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/projects/some_project/BVL_FATHER_SLC52A2/BVL_FATHER_SLC52A2.vcf.gz.gorz
URI: s3://gdb-unit-test-data/projects/some_project/BVL_FATHER_SLC52A2/BVL_FATHER_SLC52A2.vcf.gz.gorz
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ITestS3Shared.testProjectFileRead:
ITestS3Shared#L228
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/projects/some_project/BVL_MOTHER_SLC52A2.vcf.gz.gorz
URI: s3://gdb-unit-test-data/projects/some_project/BVL_MOTHER_SLC52A2.vcf.gz.gorz
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ITestS3Shared.testRegionSharedRead:
ITestS3Shared#L196
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/shared/BVL_MOTHER_SLC52A2/BVL_MOTHER_SLC52A2.vcf.gz.gorz
URI: s3://gdb-unit-test-data/shared/BVL_MOTHER_SLC52A2/BVL_MOTHER_SLC52A2.vcf.gz.gorz
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ITestS3Shared.testWriteExplicitWrite:
ITestS3Shared#L1
org.gorpipe.exceptions.GorResourceException: Close error
URI:
Cause: Failed to put data into S3 Client object
Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
Query Source: [#x]
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ITestS3Shared.testProjecSharedProjecttWriteUserDataServer:
ITestS3Shared#L1
org.gorpipe.exceptions.GorResourceException: Close error
URI:
Cause: Failed to put data into S3 Client object
Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
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ITestS3Shared.testProjectReadUserData:
ITestS3Shared#L163
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/projects/some_project/user_data/BVL_INDEX_SLC52A2/BVL_INDEX_SLC52A2.vcf.gz.gorz
URI: s3://gdb-unit-test-data/projects/some_project/user_data/BVL_INDEX_SLC52A2/BVL_INDEX_SLC52A2.vcf.gz.gorz
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ITestS3Shared.testRegionSharedFileRead:
ITestS3Shared#L260
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/shared/BVL_FATHER_SLC52A2.vcf.gz.gorz
URI: s3://gdb-unit-test-data/shared/BVL_FATHER_SLC52A2.vcf.gz.gorz
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ITestS3Shared.testProjectSharedRead:
ITestS3Shared#L180
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/shared/BVL_MOTHER_SLC52A2/BVL_MOTHER_SLC52A2.vcf.gz.gorz
URI: s3://gdb-unit-test-data/shared/BVL_MOTHER_SLC52A2/BVL_MOTHER_SLC52A2.vcf.gz.gorz
|
ITestS3Shared.testFallBackProjectToSharedProject:
ITestS3Shared#L133
org.junit.ComparisonFailure: expected:<.../gdb-unit-test-data/[shared]/BVL_MOTHER_SLC52A2/...> but was:<.../gdb-unit-test-data/[projects/some_project]/BVL_MOTHER_SLC52A2/...>
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ITestS3Shared.testProjectWriteRootCLI:
ITestS3Shared#L1
org.gorpipe.exceptions.GorResourceException: Close error
URI:
Cause: Failed to put data into S3 Client object
Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
|
ITestS3Shared.testProjectWriteUserDataWithIndexServer:
ITestS3Shared#L1
org.gorpipe.exceptions.GorResourceException: Close error
URI:
Cause: Failed to put data into S3 Client object
Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
|
ITestS3Shared.testSharedWriteUserDataServer:
ITestS3Shared#L1
org.gorpipe.exceptions.GorResourceException: Close error
URI:
Cause: Failed to put data into S3 Client object
Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
|
ITestS3Shared.testGlobalSharedRead:
ITestS3Shared#L212
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/shared/BVL_MOTHER_SLC52A2/BVL_MOTHER_SLC52A2.vcf.gz.gorz
URI: s3://gdb-unit-test-data/shared/BVL_MOTHER_SLC52A2/BVL_MOTHER_SLC52A2.vcf.gz.gorz
|
ITestS3Table.testBucketizeLocalTableS3DataS3DataBuckets:
ITestS3Table#L165
org.gorpipe.exceptions.GorDataException: Could not get header for validation from input file s3://gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
Cause: Giving up after 60133 milliseconds and 33 retries
class org.gorpipe.exceptions.GorResourceException: Failed to load metadata from cache for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
Failed to load metadata from cache for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
org.gorpipe.exceptions.GorResourceException: Failed to load metadata for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
Cause: Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
Failed to load metadata for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
|
ITestS3Table.testBucketizeLocalTableS3DataS3DataBucketsRelative:
ITestS3Table#L199
org.gorpipe.exceptions.GorDataException: Could not get header for validation from input file s3://gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
Cause: Giving up after 65099 milliseconds and 34 retries
class org.gorpipe.exceptions.GorResourceException: Failed to load metadata from cache for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
Failed to load metadata from cache for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
org.gorpipe.exceptions.GorResourceException: Failed to load metadata for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
Cause: Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
Failed to load metadata for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
|
ITestS3Table.testInsertLocalTableS3DataBasic:
ITestS3Table#L104
org.gorpipe.exceptions.GorDataException: Could not get header for validation from input file s3://gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
Cause: Giving up after 64779 milliseconds and 34 retries
class org.gorpipe.exceptions.GorResourceException: Failed to load metadata from cache for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
Failed to load metadata from cache for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
org.gorpipe.exceptions.GorResourceException: Failed to load metadata for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
Cause: Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
Failed to load metadata for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
|
ITestS3Table.testBucketizeLocalTableS3DataLocalBuckets:
ITestS3Table#L113
org.gorpipe.exceptions.GorDataException: Could not get header for validation from input file s3://gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
Cause: Giving up after 65158 milliseconds and 34 retries
class org.gorpipe.exceptions.GorResourceException: Failed to load metadata from cache for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
Failed to load metadata from cache for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
org.gorpipe.exceptions.GorResourceException: Failed to load metadata for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
Cause: Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
Failed to load metadata for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
|
ITestS3Table.testBucketizeLocalTableS3DataS3Buckets:
ITestS3Table#L134
org.gorpipe.exceptions.GorDataException: Could not get header for validation from input file s3://gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
Cause: Giving up after 64835 milliseconds and 34 retries
class org.gorpipe.exceptions.GorResourceException: Failed to load metadata from cache for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
Failed to load metadata from cache for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
org.gorpipe.exceptions.GorResourceException: Failed to load metadata for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
Cause: Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
Failed to load metadata for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor
Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
|
ITestTableManager.testS3DictionaryReadLocalLink:
ITestTableManager#L180
org.gorpipe.exceptions.GorResourceException: Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@2c1a0f82/gdb-unit-test-data/tmp/some_project/testS3DictionaryLocalLink
Cause: Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
|
ITestTableManager.testS3DictionaryRead:
ITestTableManager#L160
org.gorpipe.exceptions.GorResourceException: Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@2c1a0f82/gdb-unit-test-data/tmp/some_project/testS3DictionaryRead
Cause: Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
|
ITestFilesS3Source.testCreateDeleteListEmtpyDirectory:
ITestFilesS3Source#L19
java.lang.NullPointerException: Access key ID cannot be blank.
|
ITestFilesS3Source.testList:
ITestFilesS3Source#L19
java.lang.NullPointerException: Access key ID cannot be blank.
|
ITestFilesS3Source.testIsDirectory:
ITestFilesS3Source#L19
java.lang.NullPointerException: Access key ID cannot be blank.
|
ITestFilesS3Source.testExists:
ITestFilesS3Source#L19
java.lang.NullPointerException: Access key ID cannot be blank.
|
ITestS3Source.testS3MetaWithMetafile:
ITestS3Source#L1
org.gorpipe.exceptions.GorResourceException: Close error
URI:
Cause: Failed to put data into S3 Client object
Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
|
ITestS3Source.testS3WritePgorGord:
ITestS3Source#L1
org.gorpipe.exceptions.GorResourceException: Close error
URI:
Cause: Failed to put data into S3 Client object
Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
Query Source: [thepgorquery_chr5_1]
|
ITestS3Source.testS3NotAllBytesEx:
ITestS3Source#L175
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz
URI: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz
Request ID: b74c1c15-05cf-452f-ac03-95ef505bab54
Query:
gor s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz -p chr2 | top 1000000 | group genome -count
Command Step: gor s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz -p chr2
Command Name: GOR
Command Index: 1
Extra info: Hostname=fv-az1429-368
|
ITestS3Source.testS3WriteServerMode:
ITestS3Source#L1
org.gorpipe.exceptions.GorResourceException: Close error
URI:
Cause: Failed to put data into S3 Client object
Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
|
ITestS3Source.testS3Write:
ITestS3Source#L1
org.gorpipe.exceptions.GorResourceException: Close error
URI:
Cause: Failed to put data into S3 Client object
Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
|
ITestS3Source.testS3Meta:
ITestS3Source#L183
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/s3write/genes.gor
URI: s3://gdb-unit-test-data/s3write/genes.gor
Request ID: 211e385f-42d3-4091-b933-4859838db834
Query:
meta s3://gdb-unit-test-data/s3write/genes.gor
Command Step: meta s3://gdb-unit-test-data/s3write/genes.gor
Command Name: META
Command Index: 1
Extra info: Hostname=fv-az1429-368
|
ITestS3Source.testMoreSizes:
ITestS3Source#L77
java.lang.NullPointerException: Access key ID cannot be blank.
|
ITestS3Source.testFullStream:
ITestS3Source#L77
java.lang.NullPointerException: Access key ID cannot be blank.
|
ITestS3Source.testMetadataOnEmpty:
ITestS3Source#L77
java.lang.NullPointerException: Access key ID cannot be blank.
|
ITestS3Source.testRangeStream:
ITestS3Source#L77
java.lang.NullPointerException: Access key ID cannot be blank.
|
ITestS3Source.testRandomSeeks:
ITestS3Source#L77
java.lang.NullPointerException: Access key ID cannot be blank.
|
testReport
Error: The process '/usr/bin/git' failed with exit code 128
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test
Test report summary exceeded limit of 65535 bytes and will be trimmed
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Artifacts
Produced during runtime
Name | Size | |
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integrationTest-reports
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59.3 KB |
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slowTest-reports
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9.22 KB |
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test-reports
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284 KB |
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