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Fail test for testing purposes. #35

Fail test for testing purposes.

Fail test for testing purposes. #35

Triggered via push November 12, 2024 12:47
Status Failure
Total duration 8m 10s
Artifacts 3

build.yml

on: push
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77 errors and 1 warning
org.gorpipe.s3.driver.ITestFilesS3Source ► testCreateDeleteListEmtpyDirectory: drivers/src/test/java/org/gorpipe/s3/driver/ITestFilesS3Source.java#L78
Failed test found in: drivers/build/test-results/test/TEST-org.gorpipe.s3.driver.ITestFilesS3Source.xml Error: java.lang.NullPointerException: Access key ID cannot be blank.
org.gorpipe.s3.driver.ITestFilesS3Source ► testList: drivers/src/test/java/org/gorpipe/s3/driver/ITestFilesS3Source.java#L78
Failed test found in: drivers/build/test-results/test/TEST-org.gorpipe.s3.driver.ITestFilesS3Source.xml Error: java.lang.NullPointerException: Access key ID cannot be blank.
org.gorpipe.s3.driver.ITestFilesS3Source ► testIsDirectory: drivers/src/test/java/org/gorpipe/s3/driver/ITestFilesS3Source.java#L78
Failed test found in: drivers/build/test-results/test/TEST-org.gorpipe.s3.driver.ITestFilesS3Source.xml Error: java.lang.NullPointerException: Access key ID cannot be blank.
org.gorpipe.s3.driver.ITestFilesS3Source ► testExists: drivers/src/test/java/org/gorpipe/s3/driver/ITestFilesS3Source.java#L78
Failed test found in: drivers/build/test-results/test/TEST-org.gorpipe.s3.driver.ITestFilesS3Source.xml Error: java.lang.NullPointerException: Access key ID cannot be blank.
org.gorpipe.s3.driver.ITestS3Source ► testS3MetaWithMetafile: base/src/main/java/org/gorpipe/base/streams/FullRetryOutputStream.java#L37
Failed test found in: drivers/build/test-results/test/TEST-org.gorpipe.s3.driver.ITestS3Source.xml Error: org.gorpipe.exceptions.GorResourceException: Close error
org.gorpipe.s3.driver.ITestS3Source ► testS3WritePgorGord: base/src/main/java/org/gorpipe/base/streams/FullRetryOutputStream.java#L37
Failed test found in: drivers/build/test-results/test/TEST-org.gorpipe.s3.driver.ITestS3Source.xml Error: org.gorpipe.exceptions.GorResourceException: Close error
org.gorpipe.s3.driver.ITestS3Source ► testS3NotAllBytesEx: model/src/main/java/org/gorpipe/gor/driver/PluggableGorDriver.java#L138
Failed test found in: drivers/build/test-results/test/TEST-org.gorpipe.s3.driver.ITestS3Source.xml Error: org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz
org.gorpipe.s3.driver.ITestS3Source ► testS3WriteServerMode: base/src/main/java/org/gorpipe/base/streams/FullRetryOutputStream.java#L37
Failed test found in: drivers/build/test-results/test/TEST-org.gorpipe.s3.driver.ITestS3Source.xml drivers/build/test-results/test/TEST-org.gorpipe.s3.driver.ITestS3Source.xml Error: org.gorpipe.exceptions.GorResourceException: Close error
org.gorpipe.s3.driver.ITestS3Source ► testS3Meta: model/src/main/java/org/gorpipe/gor/driver/PluggableGorDriver.java#L155
Failed test found in: drivers/build/test-results/test/TEST-org.gorpipe.s3.driver.ITestS3Source.xml Error: org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/s3write/genes.gor
org.gorpipe.s3.driver.ITestS3Source ► testMoreSizes: drivers/src/test/java/org/gorpipe/s3/driver/ITestS3Source.java#L82
Failed test found in: drivers/build/test-results/test/TEST-org.gorpipe.s3.driver.ITestS3Source.xml Error: java.lang.NullPointerException: Access key ID cannot be blank.
org.gorpipe.s3.driver.ITestS3Source ► testFullStream: drivers/src/test/java/org/gorpipe/s3/driver/ITestS3Source.java#L82
Failed test found in: drivers/build/test-results/test/TEST-org.gorpipe.s3.driver.ITestS3Source.xml Error: java.lang.NullPointerException: Access key ID cannot be blank.
test
Failed test were found and 'fail-on-error' option is set to true
test
Process completed with exit code 1.
org.gorpipe.s3.driver.ITestBvlMinOnS3 ► testWithDefaultCredentials: drivers/src/test/java/org/gorpipe/s3/driver/ITestBvlMinOnS3.java#L101
Failed test found in: drivers/build/test-results/integrationTest/TEST-org.gorpipe.s3.driver.ITestBvlMinOnS3.xml Error: java.lang.AssertionError
org.gorpipe.s3.driver.ITestBvlMinOnS3 ► testWithTemporaryCredentials: drivers/src/test/java/org/gorpipe/s3/driver/ITestBvlMinOnS3.java#L178
Failed test found in: drivers/build/test-results/integrationTest/TEST-org.gorpipe.s3.driver.ITestBvlMinOnS3.xml Error: java.lang.IllegalArgumentException: Access key cannot be null.
org.gorpipe.s3.driver.ITestBvlMinOnS3 ► testBam: model/src/main/java/org/gorpipe/gor/driver/PluggableGorDriver.java#L138
Failed test found in: drivers/build/test-results/integrationTest/TEST-org.gorpipe.s3.driver.ITestBvlMinOnS3.xml Error: org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/bam/BVL_INDEX_SLC52A2.bam
org.gorpipe.s3.driver.ITestBvlMinOnS3 ► testGor: model/src/main/java/org/gorpipe/gor/driver/PluggableGorDriver.java#L138
Failed test found in: drivers/build/test-results/integrationTest/TEST-org.gorpipe.s3.driver.ITestBvlMinOnS3.xml Error: org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/derived/raw_bam_to_gor/BVL_INDEX_SLC52A2.bam.gor
org.gorpipe.s3.driver.ITestBvlMinOnS3 ► testVcf: model/src/main/java/org/gorpipe/gor/driver/PluggableGorDriver.java#L138
Failed test found in: drivers/build/test-results/integrationTest/TEST-org.gorpipe.s3.driver.ITestBvlMinOnS3.xml Error: org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/derived/raw_vcf/BVL_INDEX_SLC52A2.vcf
org.gorpipe.s3.driver.ITestBvlMinOnS3 ► testVcfGz: model/src/main/java/org/gorpipe/gor/driver/PluggableGorDriver.java#L138
Failed test found in: drivers/build/test-results/integrationTest/TEST-org.gorpipe.s3.driver.ITestBvlMinOnS3.xml Error: org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/vcf/BVL_INDEX_SLC52A2.vcf.gz
org.gorpipe.s3.driver.ITestBvlMinOnS3 ► testGorz: model/src/main/java/org/gorpipe/gor/driver/PluggableGorDriver.java#L138
Failed test found in: drivers/build/test-results/integrationTest/TEST-org.gorpipe.s3.driver.ITestBvlMinOnS3.xml Error: org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/derived/raw_bam_to_gor/BVL_INDEX_SLC52A2.bam.gorz
org.gorpipe.s3.driver.UTestS3SeekableFile ► testBasicGorz: model/src/main/java/org/gorpipe/gor/driver/PluggableGorDriver.java#L138
Failed test found in: drivers/build/test-results/integrationTest/TEST-org.gorpipe.s3.driver.UTestS3SeekableFile.xml Error: org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz
org.gorpipe.s3.driver.UTestS3SeekableFile ► testBasicBam: model/src/main/java/org/gorpipe/gor/driver/PluggableGorDriver.java#L138
Failed test found in: drivers/build/test-results/integrationTest/TEST-org.gorpipe.s3.driver.UTestS3SeekableFile.xml Error: org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/bam/BVL_FATHER_SLC52A2.bam
org.gorpipe.s3.driver.UTestS3SeekableFile ► testBasicGor: model/src/main/java/org/gorpipe/gor/driver/PluggableGorDriver.java#L138
Failed test found in: drivers/build/test-results/integrationTest/TEST-org.gorpipe.s3.driver.UTestS3SeekableFile.xml Error: org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz
org.gorpipe.s3.driver.UTestS3SeekableFile ► testBasicSeekStream: model/src/main/java/org/gorpipe/gor/driver/PluggableGorDriver.java#L138
Failed test found in: drivers/build/test-results/integrationTest/TEST-org.gorpipe.s3.driver.UTestS3SeekableFile.xml Error: org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz
integrationTest
Process completed with exit code 1.
integrationTest
Failed test were found and 'fail-on-error' option is set to true
ITestBvlMinOnS3.testWithDefaultCredentials: ITestBvlMinOnS3#L101
java.lang.AssertionError
ITestBvlMinOnS3.testWithTemporaryCredentials: ITestBvlMinOnS3#L178
java.lang.IllegalArgumentException: Access key cannot be null.
ITestBvlMinOnS3.testBam: ITestBvlMinOnS3#L1
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/bam/BVL_INDEX_SLC52A2.bam URI: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/bam/BVL_INDEX_SLC52A2.bam
ITestBvlMinOnS3.testGor: ITestBvlMinOnS3#L1
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/derived/raw_bam_to_gor/BVL_INDEX_SLC52A2.bam.gor URI: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/derived/raw_bam_to_gor/BVL_INDEX_SLC52A2.bam.gor
ITestBvlMinOnS3.testVcf: ITestBvlMinOnS3#L1
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/derived/raw_vcf/BVL_INDEX_SLC52A2.vcf URI: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/derived/raw_vcf/BVL_INDEX_SLC52A2.vcf
ITestBvlMinOnS3.testVcfGz: ITestBvlMinOnS3#L1
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/vcf/BVL_INDEX_SLC52A2.vcf.gz URI: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/vcf/BVL_INDEX_SLC52A2.vcf.gz
ITestBvlMinOnS3.testGorz: ITestBvlMinOnS3#L1
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/derived/raw_bam_to_gor/BVL_INDEX_SLC52A2.bam.gorz URI: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/derived/raw_bam_to_gor/BVL_INDEX_SLC52A2.bam.gorz
UTestS3SeekableFile.testBasicGorz: UTestS3SeekableFile#L93
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz URI: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz Request ID: e52e860d-ded5-4715-a06e-8781d9b54f13 Query: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz -p chr2:1000000-1001000 Command Step: gor s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz -p chr2:1000000-1001000 Command Name: GOR Command Index: 1 Extra info: Hostname=fv-az1429-368
UTestS3SeekableFile.testBasicBam: UTestS3SeekableFile#L112
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/bam/BVL_FATHER_SLC52A2.bam URI: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/bam/BVL_FATHER_SLC52A2.bam Request ID: e56420b4-26e0-4efa-83a9-ff9e39b70afe Query: s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/bam/BVL_FATHER_SLC52A2.bam -p chr8:1285160- Command Step: gor s3://gdb-unit-test-data/csa_test_data/data_sets/bvl_min_gor/bam/BVL_FATHER_SLC52A2.bam -p chr8:1285160- Command Name: GOR Command Index: 1 Extra info: Hostname=fv-az1429-368
UTestS3SeekableFile.testBasicGor: UTestS3SeekableFile#L83
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz URI: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz Request ID: a1c3dea9-fa8a-49cf-88f2-089f3f7aeeb2 Query: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz -p chr2:1000000-1001000 Command Step: gor s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz -p chr2:1000000-1001000 Command Name: GOR Command Index: 1 Extra info: Hostname=fv-az1429-368
UTestS3SeekableFile.testBasicSeekStream: UTestS3SeekableFile#L102
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz URI: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz Request ID: 67817ad9-f112-4402-b73a-0a5fc0998371 Query: gor s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz -p chr2:1000000- | top 100000 | group chrom -count Command Step: gor s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz -p chr2:1000000- Command Name: GOR Command Index: 1 Extra info: Hostname=fv-az1429-368
ITestS3Shared.testProjectWriteUserDataServer: ITestS3Shared#L1
org.gorpipe.exceptions.GorResourceException: Close error URI: Cause: Failed to put data into S3 Client object Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
ITestS3Shared.testProjectSharedFileRead: ITestS3Shared#L244
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/shared/BVL_FATHER_SLC52A2.vcf.gz.gorz URI: s3://gdb-unit-test-data/shared/BVL_FATHER_SLC52A2.vcf.gz.gorz
ITestS3Shared.testProjectWriteUserDataCLI: ITestS3Shared#L1
org.gorpipe.exceptions.GorResourceException: Close error URI: Cause: Failed to put data into S3 Client object Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
ITestS3Shared.testGlobalSharedFileRead: ITestS3Shared#L276
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/shared/BVL_FATHER_SLC52A2.vcf.gz.gorz URI: s3://gdb-unit-test-data/shared/BVL_FATHER_SLC52A2.vcf.gz.gorz
ITestS3Shared.testProjectRead: ITestS3Shared#L147
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/projects/some_project/BVL_FATHER_SLC52A2/BVL_FATHER_SLC52A2.vcf.gz.gorz URI: s3://gdb-unit-test-data/projects/some_project/BVL_FATHER_SLC52A2/BVL_FATHER_SLC52A2.vcf.gz.gorz
ITestS3Shared.testProjectFileRead: ITestS3Shared#L228
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/projects/some_project/BVL_MOTHER_SLC52A2.vcf.gz.gorz URI: s3://gdb-unit-test-data/projects/some_project/BVL_MOTHER_SLC52A2.vcf.gz.gorz
ITestS3Shared.testRegionSharedRead: ITestS3Shared#L196
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/shared/BVL_MOTHER_SLC52A2/BVL_MOTHER_SLC52A2.vcf.gz.gorz URI: s3://gdb-unit-test-data/shared/BVL_MOTHER_SLC52A2/BVL_MOTHER_SLC52A2.vcf.gz.gorz
ITestS3Shared.testWriteExplicitWrite: ITestS3Shared#L1
org.gorpipe.exceptions.GorResourceException: Close error URI: Cause: Failed to put data into S3 Client object Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.] Query Source: [#x]
ITestS3Shared.testProjecSharedProjecttWriteUserDataServer: ITestS3Shared#L1
org.gorpipe.exceptions.GorResourceException: Close error URI: Cause: Failed to put data into S3 Client object Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
ITestS3Shared.testProjectReadUserData: ITestS3Shared#L163
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/projects/some_project/user_data/BVL_INDEX_SLC52A2/BVL_INDEX_SLC52A2.vcf.gz.gorz URI: s3://gdb-unit-test-data/projects/some_project/user_data/BVL_INDEX_SLC52A2/BVL_INDEX_SLC52A2.vcf.gz.gorz
ITestS3Shared.testRegionSharedFileRead: ITestS3Shared#L260
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/shared/BVL_FATHER_SLC52A2.vcf.gz.gorz URI: s3://gdb-unit-test-data/shared/BVL_FATHER_SLC52A2.vcf.gz.gorz
ITestS3Shared.testProjectSharedRead: ITestS3Shared#L180
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/shared/BVL_MOTHER_SLC52A2/BVL_MOTHER_SLC52A2.vcf.gz.gorz URI: s3://gdb-unit-test-data/shared/BVL_MOTHER_SLC52A2/BVL_MOTHER_SLC52A2.vcf.gz.gorz
ITestS3Shared.testFallBackProjectToSharedProject: ITestS3Shared#L133
org.junit.ComparisonFailure: expected:<.../gdb-unit-test-data/[shared]/BVL_MOTHER_SLC52A2/...> but was:<.../gdb-unit-test-data/[projects/some_project]/BVL_MOTHER_SLC52A2/...>
ITestS3Shared.testProjectWriteRootCLI: ITestS3Shared#L1
org.gorpipe.exceptions.GorResourceException: Close error URI: Cause: Failed to put data into S3 Client object Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
ITestS3Shared.testProjectWriteUserDataWithIndexServer: ITestS3Shared#L1
org.gorpipe.exceptions.GorResourceException: Close error URI: Cause: Failed to put data into S3 Client object Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
ITestS3Shared.testSharedWriteUserDataServer: ITestS3Shared#L1
org.gorpipe.exceptions.GorResourceException: Close error URI: Cause: Failed to put data into S3 Client object Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
ITestS3Shared.testGlobalSharedRead: ITestS3Shared#L212
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/shared/BVL_MOTHER_SLC52A2/BVL_MOTHER_SLC52A2.vcf.gz.gorz URI: s3://gdb-unit-test-data/shared/BVL_MOTHER_SLC52A2/BVL_MOTHER_SLC52A2.vcf.gz.gorz
ITestS3Table.testBucketizeLocalTableS3DataS3DataBuckets: ITestS3Table#L165
org.gorpipe.exceptions.GorDataException: Could not get header for validation from input file s3://gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor Cause: Giving up after 60133 milliseconds and 33 retries class org.gorpipe.exceptions.GorResourceException: Failed to load metadata from cache for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor Failed to load metadata from cache for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor org.gorpipe.exceptions.GorResourceException: Failed to load metadata for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor Cause: Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.] Failed to load metadata for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
ITestS3Table.testBucketizeLocalTableS3DataS3DataBucketsRelative: ITestS3Table#L199
org.gorpipe.exceptions.GorDataException: Could not get header for validation from input file s3://gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor Cause: Giving up after 65099 milliseconds and 34 retries class org.gorpipe.exceptions.GorResourceException: Failed to load metadata from cache for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor Failed to load metadata from cache for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor org.gorpipe.exceptions.GorResourceException: Failed to load metadata for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor Cause: Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.] Failed to load metadata for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
ITestS3Table.testInsertLocalTableS3DataBasic: ITestS3Table#L104
org.gorpipe.exceptions.GorDataException: Could not get header for validation from input file s3://gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor Cause: Giving up after 64779 milliseconds and 34 retries class org.gorpipe.exceptions.GorResourceException: Failed to load metadata from cache for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor Failed to load metadata from cache for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor org.gorpipe.exceptions.GorResourceException: Failed to load metadata for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor Cause: Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.] Failed to load metadata for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
ITestS3Table.testBucketizeLocalTableS3DataLocalBuckets: ITestS3Table#L113
org.gorpipe.exceptions.GorDataException: Could not get header for validation from input file s3://gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor Cause: Giving up after 65158 milliseconds and 34 retries class org.gorpipe.exceptions.GorResourceException: Failed to load metadata from cache for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor Failed to load metadata from cache for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor org.gorpipe.exceptions.GorResourceException: Failed to load metadata for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor Cause: Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.] Failed to load metadata for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
ITestS3Table.testBucketizeLocalTableS3DataS3Buckets: ITestS3Table#L134
org.gorpipe.exceptions.GorDataException: Could not get header for validation from input file s3://gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor Cause: Giving up after 64835 milliseconds and 34 retries class org.gorpipe.exceptions.GorResourceException: Failed to load metadata from cache for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor Failed to load metadata from cache for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor org.gorpipe.exceptions.GorResourceException: Failed to load metadata for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor Cause: Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.] Failed to load metadata for gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@680408ac/gdb-unit-test-data/csa_test_data/data_sets/sim20-micro/source/var/D3_WGC053023D.wgs.genotypes.gor Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
ITestTableManager.testS3DictionaryReadLocalLink: ITestTableManager#L180
org.gorpipe.exceptions.GorResourceException: Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.] URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@2c1a0f82/gdb-unit-test-data/tmp/some_project/testS3DictionaryLocalLink Cause: Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
ITestTableManager.testS3DictionaryRead: ITestTableManager#L160
org.gorpipe.exceptions.GorResourceException: Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.] URI: s3://software.amazon.awssdk.services.s3.internal.crossregion.S3CrossRegionSyncClient@2c1a0f82/gdb-unit-test-data/tmp/some_project/testS3DictionaryRead Cause: Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
ITestFilesS3Source.testCreateDeleteListEmtpyDirectory: ITestFilesS3Source#L19
java.lang.NullPointerException: Access key ID cannot be blank.
ITestFilesS3Source.testList: ITestFilesS3Source#L19
java.lang.NullPointerException: Access key ID cannot be blank.
ITestFilesS3Source.testIsDirectory: ITestFilesS3Source#L19
java.lang.NullPointerException: Access key ID cannot be blank.
ITestFilesS3Source.testExists: ITestFilesS3Source#L19
java.lang.NullPointerException: Access key ID cannot be blank.
ITestS3Source.testS3MetaWithMetafile: ITestS3Source#L1
org.gorpipe.exceptions.GorResourceException: Close error URI: Cause: Failed to put data into S3 Client object Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
ITestS3Source.testS3WritePgorGord: ITestS3Source#L1
org.gorpipe.exceptions.GorResourceException: Close error URI: Cause: Failed to put data into S3 Client object Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.] Query Source: [thepgorquery_chr5_1]
ITestS3Source.testS3NotAllBytesEx: ITestS3Source#L175
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz URI: s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz Request ID: b74c1c15-05cf-452f-ac03-95ef505bab54 Query: gor s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz -p chr2 | top 1000000 | group genome -count Command Step: gor s3://gdb-unit-test-data/csa_test_data/data_sets/ref/versions/hg19/dbsnp.gorz -p chr2 Command Name: GOR Command Index: 1 Extra info: Hostname=fv-az1429-368
ITestS3Source.testS3WriteServerMode: ITestS3Source#L1
org.gorpipe.exceptions.GorResourceException: Close error URI: Cause: Failed to put data into S3 Client object Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
ITestS3Source.testS3Write: ITestS3Source#L1
org.gorpipe.exceptions.GorResourceException: Close error URI: Cause: Failed to put data into S3 Client object Unable to load credentials from any of the providers in the chain AwsCredentialsProviderChain(credentialsProviders=[SystemPropertyCredentialsProvider(), EnvironmentVariableCredentialsProvider(), WebIdentityTokenCredentialsProvider(), ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])), ContainerCredentialsProvider(), InstanceProfileCredentialsProvider()]) : [SystemPropertyCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., EnvironmentVariableCredentialsProvider(): Unable to load credentials from system settings. Access key must be specified either via environment variable (AWS_ACCESS_KEY_ID) or system property (aws.accessKeyId)., WebIdentityTokenCredentialsProvider(): Either the environment variable AWS_WEB_IDENTITY_TOKEN_FILE or the javaproperty aws.webIdentityTokenFile must be set., ProfileCredentialsProvider(profileName=default, profileFile=ProfileFile(sections=[])): Profile file contained no credentials for profile 'default': ProfileFile(sections=[]), ContainerCredentialsProvider(): Cannot fetch credentials from container - neither AWS_CONTAINER_CREDENTIALS_FULL_URI or AWS_CONTAINER_CREDENTIALS_RELATIVE_URI environment variables are set., InstanceProfileCredentialsProvider(): Failed to load credentials from IMDS.]
ITestS3Source.testS3Meta: ITestS3Source#L183
org.gorpipe.exceptions.GorResourceException: Input source does not exist: s3://gdb-unit-test-data/s3write/genes.gor URI: s3://gdb-unit-test-data/s3write/genes.gor Request ID: 211e385f-42d3-4091-b933-4859838db834 Query: meta s3://gdb-unit-test-data/s3write/genes.gor Command Step: meta s3://gdb-unit-test-data/s3write/genes.gor Command Name: META Command Index: 1 Extra info: Hostname=fv-az1429-368
ITestS3Source.testMoreSizes: ITestS3Source#L77
java.lang.NullPointerException: Access key ID cannot be blank.
ITestS3Source.testFullStream: ITestS3Source#L77
java.lang.NullPointerException: Access key ID cannot be blank.
ITestS3Source.testMetadataOnEmpty: ITestS3Source#L77
java.lang.NullPointerException: Access key ID cannot be blank.
ITestS3Source.testRangeStream: ITestS3Source#L77
java.lang.NullPointerException: Access key ID cannot be blank.
ITestS3Source.testRandomSeeks: ITestS3Source#L77
java.lang.NullPointerException: Access key ID cannot be blank.
testReport
Error: The process '/usr/bin/git' failed with exit code 128
test
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