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Feature/assoc demo #72
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Quick mode only requires 2 LASSO calls for estimating std dev instead of 5. Minor changes in several places including modifications to the test suite and assoc test params.
- Contains code fragments to experiment with EM - More metrics reported (support recovered in Decode for each var) - Timing information (experimental) - Default params in assoc_sim are modified to match use cases closer - Different metrics presented in association test suite results page
- moved 2-way association code to its own file - moved specs related to assoctest to its own file - other minor changes
- moving some map code to read_input.R - analyze_assoc_expt now includes a verbose mode
- resolved conflicts - modified code to use new Encode interface - modified rappor_assoc_sim.py to use same interface as rappor_sim.py
Also, some minor refactoring.
- uncommented experimental code in decode2way and documented it - renamed function that processes assoc maps - deleted params.csv
- inverted noise matrix outside loop - renamed gen_assoc_reports - added its test to test.sh - make-summary now shows original dimensions for variables
- threw fitdistribution experimental code into separate function that is now only called by a flag passed to FitDistribution - flag added to assoctest.sh to run comparisons to EM - added package jsonlite to setup - further documentation added in sum_bits_assoc
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Reopening #48 (closed due to cli error)