Elixir plant Breeding API JSON ETL

• Extract BrAPI endpoint.
• Transform extracted data (into Elasticsearch bulk json, into JSON-LD, into RDF)
• Load JSON into Elasticsearch or RDF into a virtuoso

I. Script requirements

• Python version 3.6.x
• Python dependencies (pip install -r requirements.txt)

II. Configuration

ETL process configurations

The configurations for the ETL process is defined in the ./config folder.

Data sources

The BrAPI data source are described in the ./sources folder in JSON-LD format using the schema.org vocabulary.

III. Execution

The main.py script can be used to launch the full BrAPI to elasticsearch or BrAPI to virtuoso ETL. To get the usage help run the following command:

python3 main.py

See README-elasticsearch.md for specific details on BrAPI to elasticsearch ETL.

See README-virtuoso.md for specific details on BrAPI to virtuoso ETL.