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Change nematic example to conform to new API for freud 3.0 #68

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Feb 13, 2024
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e5053e8
add initial changes to nematic notebook
DomFijan Apr 18, 2023
9dd4eae
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Apr 18, 2023
d581391
Combine and reword explanations
AlainKadar Apr 19, 2023
c5abba0
updates, not done yet
DomFijan Apr 21, 2023
69572c3
add eigenvalue and eigenvector explanations. Expand degree of randomi…
DomFijan Apr 24, 2023
7f03008
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Apr 24, 2023
8589fac
add smectic intro
DomFijan Apr 24, 2023
bb18bbb
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Apr 24, 2023
a96cf52
update smectic example
DomFijan Apr 24, 2023
1a29cf0
smectic
DomFijan Apr 24, 2023
89f2bee
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Apr 24, 2023
a923f34
multiple plots
DomFijan Apr 25, 2023
3339b10
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Apr 25, 2023
c11b73b
make nematic plots nicer, remove printsdsfdsaaa
DomFijan Apr 26, 2023
26e9042
finish smectic
DomFijan Apr 26, 2023
428c4ae
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Apr 26, 2023
36e48e1
Rendering, wording, and typo changes
Apr 27, 2023
37ed314
Apply suggested edits from PR review
DomFijan Jun 30, 2023
775a328
apply suggested changes from review
DomFijan Sep 18, 2023
faacd60
move smectic stuff to a new example
DomFijan Sep 18, 2023
3abc506
fix equation numbering
DomFijan Sep 18, 2023
6e22191
apply suggestions from code review
DomFijan Sep 29, 2023
6b8cf5d
fix title
DomFijan Sep 29, 2023
2cf8758
reword smectic order parameter example
tommy-waltmann Jan 31, 2024
1852c8c
next round of edits for nematic examples
tommy-waltmann Feb 1, 2024
b73e210
constrain gsd version
tommy-waltmann Feb 12, 2024
e761a99
Merge branch 'example/nematic-new-api' of github.com:glotzerlab/freud…
tommy-waltmann Feb 12, 2024
7014e53
merge branch next into example/nematic-new-api
tommy-waltmann Feb 13, 2024
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19,145 changes: 19,145 additions & 0 deletions examples/Smectic.ipynb

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2 changes: 2 additions & 0 deletions module_intros/density.LocalDensity.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -31,6 +31,8 @@
"outputs": [],
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"source": [
"# Define some helper plotting functions.\n",
"\n",
"\n",
"def add_patches(ax, points, radius=1, fill=False, color=\"#1f77b4\", ls=\"solid\", lw=None):\n",
" \"\"\"Add set of points as patches with radius to the provided axis\"\"\"\n",
" for pt in points:\n",
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2 changes: 2 additions & 0 deletions module_intros/density.RDF-BinWidth.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -27,6 +27,8 @@
"outputs": [],
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"source": [
"# Define some helper plotting functions.\n",
"\n",
"\n",
"def plot_rdf(box, points, prop, r_max=3.5, bins_array=[20, 75, 3000]):\n",
" \"\"\"Helper function for plotting RDFs.\"\"\"\n",
" fig, axes = plt.subplots(1, len(bins_array), figsize=(16, 3))\n",
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36,997 changes: 36,794 additions & 203 deletions module_intros/order.Nematic.ipynb

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