Fix typo and add UUID to temporary chem dump names so that .mzMLs wit…

…h the same basename but different dirname can be used
glasgowcompbio · Apr 23, 2024 · a2a0b59 · a2a0b59
1 parent b935151
commit a2a0b59
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/vimms/Evaluation.py b/vimms/Evaluation.py
@@ -336,7 +336,7 @@ def from_aligned_boxfile(cls, reader, aligned_file, min_box_ppm=None):
                             float(inner["RT end"]) * reader.RT_FACTOR,
                             float(inner["m/z min"]),
                             float(inner["m/z max"]),
-                            round_digits=None)
+                            round_digits=None
                         ).apply_min_box_ppm(ywidth=min_box_ppm, round_digits=None)
                     )
                 else:

diff --git a/vimms/Experiment.py b/vimms/Experiment.py
@@ -6,6 +6,7 @@
 import inspect
 import multiprocessing
 import json
+import uuid
 
 from vimms.Common import POSITIVE, save_obj, load_obj
 from vimms.Roi import RoiBuilderParams
@@ -304,7 +305,7 @@ def _gen_chems(fs, ionisation_mode, out_dir, point_noise_threshold, chem_noise_t
         generated = cm.sample(None, 2, source_polarity=ionisation_mode)
 
         basename = ".".join(os.path.basename(fs).split(".")[:-1])
-        ppath = os.path.join(out_dir, f"{basename}_temp.pkl")
+        ppath = os.path.join(out_dir, f"{basename}_temp_{uuid.uuid4()}.pkl")
         ChemSet.dump_chems(generated, ppath)
 
         return ppath