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fix error with empty index by including raw information in diff #229

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Add raw mode when parsing diffs to always get the index that can be used to get blobs.
Add deprecation notice when getting diff without raw information, but will continue to work as it did before.
Fixes #227

Would like feedback on the deprecation notice and would like to test against the foobar repository instead of passing in diff manually.

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ProcessException on change file if only mode changes
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