When using codescanning config call run queries a single time

When the codescanning config is being used by the CLI, there is a
single query suite that is generated that contains all queries to be
run by the analysis. This is different from the traditional way, where
there are potentially three query suites: builtin, custom, and packs.

We need to ensure that when the codescanning config is being used,
only a single call to run queries is used, and this call uses the
single generated query suite.

Also, this commit changes the cutoff version for codescanning config to
2.10.1. Earlier versions work, but there were some bugs that are only
fixed in 2.10.1 and later.

CHANGELOG.md

@@ -42,7 +42,6 @@ No user facing changes.
 ## 2.1.7 - 05 Apr 2022
 
 - A bug where additional queries specified in the workflow file would sometimes not be respected has been fixed. [#1018](https://github.com/github/codeql-action/pull/1018)
-No user facing changes.
 
 ## 2.1.6 - 30 Mar 2022