mapDamage v2.2.2

This release fixes an error in the main plotting script caused by changes in R 4.2 and later:

Error in (yaxis.at == 2) && (yaxis.at == ylabels.at) :
'length = 2' in coercion to 'logical(1)'

mapDamage v2.2.1

Minor update that that reverts the checks for paired-end reads.

Improve support for paired-end reads is in development.

python3

as default for the master branch since python2 not supported early 2020.
Still only single-end reads expected.

python3 single-end

• remove old paired-end tests
• fail gracefully if paired-end
• add single-end test
• na.rm = TRUE in stats so test pass

python3 version

port mapDamage to python3.
Right now, python2 fails to run

2.0.9

• @MikkelSchubert fixed missing namespace for signature

2.0.8

Improve handling of tags during rescaling, in order to prevent accidental changes to tag types (e.g. a one letter string being changed to a char) when adding the 'MR' tag to rescaled reads.

2.0.7

Added the ability to control the number of bases being rescaled on the 5' and 3' end of read termini, by using the --rescale-length-5p and --rescale-length-3p parameters. When not specified, these parameters default to the number of bases used the damage model (--seq-length).

2.0.6

fix install issue with --user option. Thanks to Ian Lissimore who found and fix the issue.

2.0.5

include proper seqtk binary after compilation