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NiftyMIC Virtualbox
Michael Ebner edited this page Feb 13, 2022
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NiftyMIC can also be used using a pre-configured virtual machine via VirtualBox. The prepared virtual machine builds on Ubuntu 18.04 and can be downloaded from here.
- Installation of VirtualBox and its Extension Pack.
- Import downloaded virtual machine (Ubuntu1804*.ova) via 'File -> Import Appliance ...' and follow the instructions.
- Set up the shared folder access via 'Settings -> Shared Folders' and replace '/home/mebner/' in Folder Path by the home directory of your host operating system, i.e. '/home/username/' on Linux or '/Users/username/' on Mac. Leave 'vboxshare' as the Folder Name for the shared folder. After set-up you will be able to access the files of your host operating system within your virtual machine at
/media/vboxshare/
.
After the VirtualBox set-up, you can start the vitual machine and log in by using the following details:
- User:
NiftyMIC
- Password:
NiftyMIC123
NiftyMIC (with MONAIfbs) is already pre-installed in the virtual machine.
To update to the latest version of NiftyMIC, open the terminal (Ctrl+Alt+T
) and run
cd Software/NiftyMIC
pip uninstall niftymic -y
git pull origin master --tags
pip install -e .
After the update, open a new terminal for the changes to take effect.
Some examples of how to use NiftyMIC are provided on the NiftyMIC page.
- Latest: VM with NiftyMIC v0.8 (replaced fetal_brain_seg by MONAIfbs)
- VM with NiftyMIC v0.7.1 (reduced ITK_NiftyMIC-build folder)
- VM with NiftyMIC v0.7 (fetal_brain_seg integration)
- VM with NiftyMIC v0.6