Skip to content

Commit

Permalink
Update syllabus.md
Browse files Browse the repository at this point in the history
  • Loading branch information
@suchzheng2
suchzheng2 committed Oct 18, 2024
1 parent 856e9cd commit 6c8a6b9
Showing 1 changed file with 3 additions and 37 deletions.
40 changes: 3 additions & 37 deletions syllabus.md
View file
Original file line number Diff line number Diff line change
Expand Up @@ -26,7 +26,10 @@ Please see [last year's syllabus](http://cbb752b23.gersteinlab.org/syllabus) (wi
| 2/26 | MINING - Unsupervised Mining #2 + Single-Cell Analysis #1 | | | |
| 3/3 | MINING - Single-Cell Analysis #2 + Medical Image Analysis | | | |
| 3/5 | MINING - Network Analysis | | | |
| | | | | |
| | | | | |
| 3/7 | Spring break begins | | | |
| | | | |
| 3/24 | MINING - Privacy | | | |
| 3/26 | MINING/MODELING - Deep Learning Advanced I | | | |
| 3/31 | MINING/MODELING - Deep Learning Advanced II | | | |
Expand All @@ -42,43 +45,6 @@ Please see [last year's syllabus](http://cbb752b23.gersteinlab.org/syllabus) (wi
| 5/7 | \*YALE\* Final examinations end | | |


| Date | Topic | This year’s lecture | [Last year’s lecture](http://cbb752b23.gersteinlab.org/syllabus) | Comment |
| ---- | ---------------------------------------------------------------------------- | ------------------- | ---------------------------------------------------------------- | ------- |
| 1/13 | \*YALE\* Spring term classes begin, 8.20 a.m. | | | |
| | | | |
| 1/13 | Introduction | | 23i1 | |
| 1/14 | DATA 1 - Genomics I | | 23d1 | |
| 1/22 | DATA 2 - Genomics II | | 23d2 | |
| 1/27 | DATA 3 - Proteomics I | | 23d3 | |
| 2/29 | DATA 4 - Proteomics II | | 23d4 | |
| 2/3 | MINING 1 - Personal Genomes + Seq. Comparison + Multi-seq Alignment | | 23i2a, 23m3, 23m4 | |
| 2/5 | MINING 2 - Fast Alignment + Variant Calling (incl. a focused section on SVs) | | 23m5,23m6a | |
| 2/10 | MINING 3 - Basic Multi-Omics Supervised Mining #1 | | 23m6b,23m7,23m8a | |
| 2/12 | MINING 4 - Supervised Mining #2 + Unsupervised Mining #1 | | 23m8b,23m8c,23m9a,23m9c | |
| 2/17 | DATA 5 - Knowledge Representation & Databases | | 23d5 | |
| 2/19 | MINING 5 - Unsupervised Mining #2 + Single-Cell Analysis | | 23m9d, 23m9e | |
| 2/24 | Quiz on 1st Half | | | |
| 2/26 | TOPICS 1 - Single-Cell Analysis (continues) + Privacy | | 23t1, 23t2 | |
| 3/3 | TOPICS 2 - Network Analysis | | 23m10a, 23m10b, 23m10c, 23m10d, 23m10e | |
| 3/5 | TOPICS 3 - Personal Genomes (from an individual's perspective) | | 23i2b | |
| | | | | |
| | | | | |
| 3/7 | Spring break begins | | | |
| | | | |
| 3/24 | TOPICS 4 - Deep Learning Fundamentals | | 23m12a | |
| 3/26 | TOPICS 5 - Deep Learning Fundamentals (continues) | | 23m12b | |
| 3/31 | TOPICS 6 - Deep Learning for Biology + Biosensor Data Analysis | | 22t3, 22t4 | |
| 4/2 | MODELING 1 - Protein Simulation I | | 23s1 | |
| 4/7 | MODELING 2 - Protein Simulation II | | 23s2 | |
| 4/9 | MODELING 3 - Protein Simulation III | | 23s3 | |
| 4/14 | MODELING 4 - Protein Simulation IV | | 23s4 | |
| 4/16 | MODELING 5 - Protein Simulation V | | | |
| 4/21 | Quiz on 2nd Half | | | |
| 4/23 | Final Presentations | | | |
| 4/25 | \*YALE\* Classes end; Reading period begins | | | |
| 5/1 | \*YALE\* Final examinations begin | | | |
| 5/7 | \*YALE\* Final examinations end | | |

### Lecture Slide Pack

See also additional readings for each topic: [Additional Readings](https://docs.google.com/document/d/1L7p4fv3XzMvzzTPIa4EFo6YD9UabBDuOBWKGjcxe5hw/edit)
Expand Down

0 comments on commit 6c8a6b9

Please sign in to comment.