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Turn off the MEGAN extension for fullchem "non-benchmark" simulations #2372

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Jul 12, 2024
Merged

Turn off the MEGAN extension for fullchem "non-benchmark" simulations #2372

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5971dcb
Turn off MEGAN extension for standard fullchem simulations
yantosca Jul 11, 2024
207c9c6
Bug fix: Make sure MEGAN is turned on for GCAP2 simulations
yantosca Jul 12, 2024
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -11,6 +11,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),

### Changed
- Now reset `State_Diag%SatDiagnCount` to zero in routine`History_Write` (instead of in `History_Netcdf_Write`)
- Update rundir creation scripts to turn off the MEGAN extension for "standard" fullchem simulations

### Fixed
- Typo in `setCommonRunSettings.sh` that made GCHP always choose mass fluxes for meteorology
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2 changes: 1 addition & 1 deletion run/GCClassic/HEMCO_Config.rc.templates/HEMCO_Config.rc.aerosol
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Expand Up @@ -171,7 +171,7 @@ VerboseOnCores: root # Accepted values: root all
--> N per snowflake : 5.0
--> Model sea salt Br- : false
--> Br- mass ratio : 2.11e-3
108 MEGAN : off ISOP/ACET/PRPE/C2H4/ALD2/MOH/EOH/MTPA/MTPO/LIMO/SESQ/SOAP/SOAS
108 MEGAN : ${RUNDIR_MEGAN_EXT} ISOP/ACET/PRPE/C2H4/ALD2/MOH/EOH/MTPA/MTPO/LIMO/SESQ/SOAP/SOAS
--> Isoprene scaling : 1.0
--> CO2 inhibition : true
--> CO2 conc (ppmv) : 390.0
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2 changes: 1 addition & 1 deletion run/GCClassic/HEMCO_Config.rc.templates/HEMCO_Config.rc.fullchem
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Expand Up @@ -194,7 +194,7 @@ VerboseOnCores: root # Accepted values: root all
--> N per snowflake : 5.0
--> Model sea salt Br- : true
--> Br- mass ratio : 2.11e-3
108 MEGAN : on ISOP/ACET/PRPE/C2H4/ALD2/MOH/EOH/MTPA/MTPO/LIMO/SESQ/SOAP/SOAS
108 MEGAN : ${RUNDIR_MEGAN_EXT} ISOP/ACET/PRPE/C2H4/ALD2/MOH/EOH/MTPA/MTPO/LIMO/SESQ/SOAP/SOAS
--> Isoprene scaling : 1.0
--> CO2 inhibition : true
--> CO2 conc (ppmv) : 390.0
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8 changes: 8 additions & 0 deletions run/GCClassic/createRunDir.sh
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Expand Up @@ -486,6 +486,11 @@ else

fi

# Turn off MEGAN for the aerosol-only simulation
if [[ "x${sim_name}" == "xaerosol" ]]; then
RUNDIR_VARS+="RUNDIR_MEGAN_EXT='off'\n"
fi

#-----------------------------------------------------------------
# Ask user to select horizontal resolution
#-----------------------------------------------------------------
Expand Down Expand Up @@ -962,6 +967,7 @@ fi
# Assign appropriate file paths and settings in HEMCO_Config.rc
if [[ ${met} = "ModelE2.1" ]]; then
RUNDIR_VARS+="RUNDIR_DUSTDEAD_EXT='on '\n"
RUNDIR_VARS+="RUNDIR_MEGAN_EXT='on '\n"
RUNDIR_VARS+="RUNDIR_SEASALT_EXT='on '\n"
RUNDIR_VARS+="RUNDIR_SOILNOX_EXT='on '\n"
RUNDIR_VARS+="RUNDIR_OFFLINE_DUST='false'\n"
Expand All @@ -974,6 +980,7 @@ if [[ ${met} = "ModelE2.1" ]]; then
else
if [[ "${sim_extra_option}" == "benchmark" ]]; then
RUNDIR_VARS+="RUNDIR_DUSTDEAD_EXT='on '\n"
RUNDIR_VARS+="RUNDIR_MEGAN_EXT='on '\n"
RUNDIR_VARS+="RUNDIR_SEASALT_EXT='on '\n"
RUNDIR_VARS+="RUNDIR_SOILNOX_EXT='on '\n"
RUNDIR_VARS+="RUNDIR_OFFLINE_DUST='false'\n"
Expand Down Expand Up @@ -1005,6 +1012,7 @@ else
RUNDIR_VARS+="RUNDIR_OFFLINE_DUST='true '\n"
fi
RUNDIR_VARS+="RUNDIR_DUSTDEAD_EXT='off'\n"
RUNDIR_VARS+="RUNDIR_MEGAN_EXT='off'\n"
RUNDIR_VARS+="RUNDIR_SOILNOX_EXT='off'\n"
RUNDIR_VARS+="RUNDIR_OFFLINE_BIOVOC='true '\n"
RUNDIR_VARS+="RUNDIR_OFFLINE_SOILNOX='true '\n"
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2 changes: 1 addition & 1 deletion run/GCHP/HEMCO_Config.rc.templates/HEMCO_Config.rc.fullchem
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Expand Up @@ -193,7 +193,7 @@ VerboseOnCores: root # Accepted values: root all
--> N per snowflake : 5.0
--> Model sea salt Br- : true
--> Br- mass ratio : 2.11e-3
108 MEGAN : on ISOP/ACET/PRPE/C2H4/ALD2/MOH/EOH/MTPA/MTPO/LIMO/SESQ/SOAP/SOAS
108 MEGAN : ${RUNDIR_MEGAN_EXT} ISOP/ACET/PRPE/C2H4/ALD2/MOH/EOH/MTPA/MTPO/LIMO/SESQ/SOAP/SOAS
--> Isoprene scaling : 1.0
--> CO2 inhibition : true
--> CO2 conc (ppmv) : 390.0
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2 changes: 2 additions & 0 deletions run/GCHP/createRunDir.sh
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Expand Up @@ -720,6 +720,7 @@ fi
# Assign appropriate file paths and settings in HEMCO_Config.rc
if [[ "${sim_extra_option}" == "benchmark" ]]; then
RUNDIR_VARS+="RUNDIR_DUSTDEAD_EXT='on '\n"
RUNDIR_VARS+="RUNDIR_MEGAN_EXT='on '\n"
RUNDIR_VARS+="RUNDIR_SEASALT_EXT='on '\n"
RUNDIR_VARS+="RUNDIR_SOILNOX_EXT='on '\n"
RUNDIR_VARS+="RUNDIR_OFFLINE_DUST='false'\n"
Expand Down Expand Up @@ -751,6 +752,7 @@ else
RUNDIR_VARS+="RUNDIR_OFFLINE_DUST='true '\n"
fi
RUNDIR_VARS+="RUNDIR_DUSTDEAD_EXT='off'\n"
RUNDIR_VARS+="RUNDIR_MEGAN_EXT='off'\n"
RUNDIR_VARS+="RUNDIR_SOILNOX_EXT='off'\n"
RUNDIR_VARS+="RUNDIR_OFFLINE_BIOVOC='true '\n"
RUNDIR_VARS+="RUNDIR_OFFLINE_SOILNOX='true '\n"
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