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Main input Class #352

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merged 5 commits into from
Feb 18, 2022
Merged

Main input Class #352

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6f82ab8
Added main_input class and example files.
feathern Jan 11, 2022
34bfada
Cleared notebook output
feathern Jan 11, 2022
575a5d8
Changelog updated
feathern Jan 11, 2022
053b87e
One more update to changelog
feathern Jan 11, 2022
844d7ec
Changed dictionaries in main_input class to OrderedDicts.
feathern Feb 18, 2022
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3 changes: 1 addition & 2 deletions CHANGELOG.md
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Expand Up @@ -9,8 +9,7 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm

## [Unreleased]
### Added
- None yet

- Added new main_input class to rayleigh_diagnostics.py. Usage examples are provided in Rayleigh/examples/main_input_class. \[Nick Featherstone; 1-11-2022; [#352](https://github.com/geodynamics/Rayleigh/pull/352)\]
### Changed
- The rotation rate is now accounted for when computing the maximum allowable timestep. Now, the timestep may not exceed CFLMax/(c1*4), where CFLMax is the CFL safety factor. c1 is the 1st Rayleigh constant, effectively the inverse of the rotational timescale (c1 = 2 Omega for reference_type=2 and 2/Ek for reference_type=1). \[Nick Featherstone; 12-11-2021; [#348](https://github.com/geodynamics/Rayleigh/pull/348)\]

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307 changes: 307 additions & 0 deletions examples/main_input_class/jobinfo.txt
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@@ -0,0 +1,307 @@

===========================================================================
Job Information
===========================================================================
Date = 2021-08-25
Time = 15:55:51
Path =

===========================================================================
Compiler Information
===========================================================================
Compiler Location = /custom/miniconda3/envs/radev/bin/mpifort
Compiler Version = GNU Fortran (GCC) 9.4.0

Compiler Flags = -O3 -ffixed-line-length-132 -DGNU_COMPILER -march=haswell
Compiler Library = -L/custom/miniconda3/envs/radev/lib -Wl,--no-as-needed -lmkl_gf_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -ldl -lstdc++

===========================================================================
Build Information
===========================================================================
Build Date = Wed 25 Aug 2021 03:47:49 PM MDT
Build Machine = Linux Sanitas 5.11.0-27-generic #29~20.04.1-Ubuntu SMP Wed Aug 11 15:58:17 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
Build Directory = /home/feathern/devel/forks/Nick/Rayleigh
Custom Directory =

Build Version = opt
Git Hash = 624e326f07a2f81f76ef41604977a584427ae570 +++ Mon Aug 16 13:16:33 2021 -0600
Git URL = [email protected]:feathern/Rayleigh.git
Git Branch = timing

===========================================================================
Preamble Information
===========================================================================
MPI
NCPU : 8
NPROW : 2
NPCOL : 4

Grid
N_R : 64
N_THETA : 96
Ell_MAX : 63
R_MIN : 5.3846E-01
R_MAX : 1.5385E+00
Chebyshev Domains : 1

Domain 1
Grid points : 64
Dealiased Polynomials : 42
Domain Lower Bound : 5.3846E-01
Domain Upper Bound : 1.5385E+00

Reference State
Reference type : Boussinesq (Non-dimensional)
Rayleigh Number : 1.0000E+05
Ekman Number : 1.0000E-03
Prandtl Number : 1.0000E+00

===========================================================================
Namelist Information
===========================================================================
&PROBLEMSIZE_NAMELIST
N_R=64 ,
N_THETA=96 ,
NPROW=2 ,
NPCOL=4 ,
RMIN= 0.53846153846153832 ,
RMAX= 1.5384615384615383 ,
NPOUT=1 ,
PRECISE_BOUNDS=-1 ,
GRID_TYPE=2 ,
L_MAX=63 ,
N_L=64 ,
ASPECT_RATIO= 0.34999999999999998 ,
SHELL_DEPTH= 1.0000000000000000 ,
NCHEBY=64 , 255*-1 ,
DOMAIN_BOUNDS= 0.53846153846153832 , 1.5384615384615383 , 255*-1.0000000000000000 ,
DEALIAS_BY= 256*-1 ,
N_UNIFORM_DOMAINS=1 ,
UNIFORM_BOUNDS=F,
/
&NUMERICAL_CONTROLS_NAMELIST
CHEBYSHEV=T,
BANDSOLVE=F,
STATIC_TRANSPOSE=F,
STATIC_CONFIG=F,
USE_PARITY=T,
DERIV_CLUGE=T,
PAD_ALLTOALL=F,
SPARSESOLVE=F,
/
&PHYSICAL_CONTROLS_NAMELIST
MAGNETISM=F,
NONLINEAR=T,
ROTATION=T,
LORENTZ_FORCES=T,
VISCOUS_HEATING=F,
OHMIC_HEATING=F,
ADVECT_REFERENCE_STATE=F,
BENCHMARK_MODE=1 ,
BENCHMARK_INTEGRATION_INTERVAL=100 ,
BENCHMARK_REPORT_INTERVAL=500 ,
MOMENTUM_ADVECTION=T,
INERTIA=T,
/
&TEMPORAL_CONTROLS_NAMELIST
ALPHA_IMPLICIT= 0.50000999999999995 ,
MAX_ITERATIONS=25000 ,
CHECK_FREQUENCY=-1 ,
CFLMAX= 0.59999999999999998 ,
CFLMIN= 0.40000000000000002 ,
MAX_TIME_STEP= 1.0000000000000000E-004,
DIAGNOSTIC_REBOOT_INTERVAL=10000000 ,
MIN_TIME_STEP= 1.0000000000000000E-013,
NUM_QUICKSAVES=2 ,
QUICKSAVE_INTERVAL=10000 ,
CHECKPOINT_INTERVAL=100000 ,
QUICKSAVE_MINUTES= -1.0000000000000000 ,
MAX_TIME_MINUTES= 100000000.00000000 ,
SAVE_LAST_TIMESTEP=T,
NEW_ITERATION=0 ,
SAVE_ON_SIGTERM=F,
MAX_SIMULATED_TIME= 1.0000000000000000E+020,
/
&IO_CONTROLS_NAMELIST
STDOUT_FLUSH_INTERVAL=50 ,
TERMINATE_CHECK_INTERVAL=50 ,
STATUSLINE_INTERVAL=1 ,
STDOUT_FILE="nofile ",
JOBINFO_FILE="jobinfo.txt ",
TERMINATE_FILE="terminate ",
INTEGER_OUTPUT_DIGITS=8 ,
INTEGER_INPUT_DIGITS=8 ,
DECIMAL_PLACES=3 ,
OUTPUTS_PER_ROW=1 ,
/
&OUTPUT_NAMELIST
MEM_FRIENDLY=F,
MERIDIONAL_VALUES= 4000*-1 ,
MERIDIONAL_FREQUENCY=90000000 ,
MERIDIONAL_NREC=1 ,
EQUATORIAL_VALUES= 4000*-1 ,
EQUATORIAL_FREQUENCY=90000000 ,
EQUATORIAL_NREC=1 ,
SHELLSLICE_VALUES= 4000*-1 ,
SHELLSLICE_FREQUENCY=90000000 ,
SHELLSLICE_NREC=1 ,
SHELLSPECTRA_VALUES= 4000*-1 ,
SHELLSPECTRA_FREQUENCY=90000000 ,
SHELLSPECTRA_NREC=1 ,
AZAVG_VALUES= 4000*-1 ,
AZAVG_FREQUENCY=90000000 ,
AZAVG_NREC=1 ,
SHELLAVG_VALUES= 4000*-1 ,
SHELLAVG_FREQUENCY=90000000 ,
SHELLAVG_NREC=1 ,
GLOBALAVG_VALUES= 4000*-1 ,
GLOBALAVG_FREQUENCY=90000000 ,
GLOBALAVG_NREC=1 ,
SPH_MODE_VALUES= 4000*-1 ,
SPH_MODE_FREQUENCY=90000000 ,
SPH_MODE_NREC=0 ,
POINT_PROBE_VALUES= 4000*0 ,
POINT_PROBE_FREQUENCY=90000000 ,
POINT_PROBE_NREC=1 ,
FULL3D_VALUES= 4000*-1 ,
FULL3D_FREQUENCY=90000000 ,
MERIDIONAL_INDICES= 8192*-1 ,
SHELLSLICE_LEVELS= 2048*-1 ,
SHELLSPECTRA_LEVELS= 2048*-1 ,
POINT_PROBE_R= 4096*-1 ,
POINT_PROBE_THETA= 4096*-1 ,
POINT_PROBE_PHI= 4096*-1 ,
SPH_MODE_ELL= 2048*-1 ,
SPH_MODE_LEVELS= 2048*-1 ,
SHELLSLICE_LEVELS_NRM= 2048*-3.0000000000000000 ,
SHELLSPECTRA_LEVELS_NRM= 2048*-3.0000000000000000 ,
MERIDIONAL_INDICES_NRM= 8192*-3.0000000000000000 ,
POINT_PROBE_R_NRM= 4096*-3.0000000000000000 ,
POINT_PROBE_PHI_NRM= 4096*-3.0000000000000000 ,
POINT_PROBE_THETA_NRM= 4096*-3.0000000000000000 ,
SPH_MODE_LEVELS_NRM= 2048*-3.0000000000000000 ,
POINT_PROBE_CACHE_SIZE=1 ,
GLOBALAVG_CACHE_SIZE=1 ,
SHELLAVG_CACHE_SIZE=1 ,
TEMP_IO_VALUES= 4000*-1 ,
TEMP_IO_FREQUENCY=90000000 ,
TEMP_IO_NREC=-1 ,
TEMP_IO_CACHE_SIZE=1 ,
TEMP_IO_ELL= 2048*-1 ,
TEMP_IO_R= 4096*-1 ,
TEMP_IO_THETA= 4096*-1 ,
TEMP_IO_PHI= 4096*-1 ,
TEMP_IO_R_NRM= 4096*-3.0000000000000000 ,
TEMP_IO_THETA_NRM= 4096*-3.0000000000000000 ,
TEMP_IO_PHI_NRM= 4096*-3.0000000000000000 ,
/
&BOUNDARY_CONDITIONS_NAMELIST
FIX_TVAR_TOP=T,
FIX_TVAR_BOTTOM=T,
T_BOTTOM= 1.0000000000000000 ,
T_TOP= 0.0000000000000000 ,
DTDR_TOP= 0.0000000000000000 ,
DTDR_BOTTOM= 0.0000000000000000 ,
FIX_DTDR_BOTTOM=F,
FIX_DTDR_TOP=F,
FIX_DIVRT_TOP=F,
FIX_DIVT_TOP=F,
FIX_DIVRFC_TOP=F,
FIX_DIVFC_TOP=F,
NO_SLIP_BOUNDARIES=T,
STRICT_L_CONSERVATION=F,
FIX_POLOIDALFIELD_TOP=F,
FIX_POLOIDALFIELD_BOTTOM=F,
C10_BOTTOM= 0.0000000000000000 ,
C10_TOP= 0.0000000000000000 ,
C11_BOTTOM= 0.0000000000000000 ,
C11_TOP= 0.0000000000000000 ,
C1M1_BOTTOM= 0.0000000000000000 ,
C1M1_TOP= 0.0000000000000000 ,
BR_BOTTOM= 0.0000000000000000 ,
DIPOLE_TILT_DEGREES= 0.0000000000000000 ,
IMPOSE_DIPOLE_FIELD=F,
NO_SLIP_TOP=T,
NO_SLIP_BOTTOM=T,
STRESS_FREE_TOP=F,
STRESS_FREE_BOTTOM=F,
T_TOP_FILE="__nothing__ ",
T_BOTTOM_FILE="__nothing__ ",
DTDR_TOP_FILE="__nothing__ ",
DTDR_BOTTOM_FILE="__nothing__ ",
C_TOP_FILE="__nothing__ ",
C_BOTTOM_FILE="__nothing__ ",
DIPOLE_FIELD_BOTTOM=F,
/
&INITIAL_CONDITIONS_NAMELIST
INIT_TYPE=1 ,
TEMP_AMP= 1.0000000000000000 ,
TEMP_W= 0.29999999999999999 ,
RESTART_ITER=0 ,
MAGNETIC_INIT_TYPE=1 ,
ALT_CHECK=F,
MAG_AMP= 1.0000000000000000 ,
CONDUCTIVE_PROFILE=F,
RESCALE_VELOCITY=F,
RESCALE_BFIELD=F,
VELOCITY_SCALE= 1.0000000000000000 ,
BFIELD_SCALE= 1.0000000000000000 ,
RESCALE_TVAR=F,
RESCALE_PRESSURE=F,
TVAR_SCALE= 1.0000000000000000 ,
PRESSURE_SCALE= 1.0000000000000000 ,
MDELTA= 0.0000000000000000 ,
T_INIT_FILE="__nothing__ ",
W_INIT_FILE="__nothing__ ",
P_INIT_FILE="__nothing__ ",
Z_INIT_FILE="__nothing__ ",
C_INIT_FILE="__nothing__ ",
A_INIT_FILE="__nothing__ ",
/
&TEST_NAMELIST
TEST_MODE=F,
NTEST_LEGENDRE=1 ,
TEST_LEGENDRE=F,
TEST_CHEBYSHEV=F,
/
&REFERENCE_NAMELIST
REFERENCE_TYPE=1 ,
POLY_N= 0.0000000000000000 ,
POLY_NRHO= 0.0000000000000000 ,
POLY_MASS= 0.0000000000000000 ,
POLY_RHO_I= 0.0000000000000000 ,
PRESSURE_SPECIFIC_HEAT= 1.0000000000000000 ,
HEATING_TYPE=0 ,
LUMINOSITY= 0.0000000000000000 ,
ANGULAR_VELOCITY= 1.0000000000000000 ,
RAYLEIGH_NUMBER= 100000.00000000000 ,
EKMAN_NUMBER= 1.0000000000000000E-003,
PRANDTL_NUMBER= 1.0000000000000000 ,
MAGNETIC_PRANDTL_NUMBER= 1.0000000000000000 ,
GRAVITY_POWER= 1.0000000000000000 ,
CUSTOM_REFERENCE_FILE="nothing ",
DISSIPATION_NUMBER= 0.0000000000000000 ,
MODIFIED_RAYLEIGH_NUMBER= 0.0000000000000000 ,
HEATING_INTEGRAL= 0.0000000000000000 ,
OVERRIDE_CONSTANTS=F,
OVERRIDE_CONSTANT= 10*F,
RA_CONSTANTS= 2000.0000000000000 , 100000.00000000000 , 1000.0000000000000 , 0.0000000000000000 , 2*1.0000000000000000 ,
4*0.0000000000000000 ,
WITH_CUSTOM_CONSTANTS= 10*0 ,
WITH_CUSTOM_FUNCTIONS= 14*0 ,
WITH_CUSTOM_REFERENCE=F,
/
&TRANSPORT_NAMELIST
NU_TYPE=1 ,
KAPPA_TYPE=1 ,
ETA_TYPE=1 ,
NU_POWER= 0.0000000000000000 ,
KAPPA_POWER= 0.0000000000000000 ,
ETA_POWER= 0.0000000000000000 ,
NU_TOP= 1.0000000000000000 ,
KAPPA_TOP= 1.0000000000000000 ,
ETA_TOP= 0.0000000000000000 ,
HYPERDIFFUSION=F,
HYPERDIFFUSION_BETA= 0.0000000000000000 ,
HYPERDIFFUSION_ALPHA= 1.0000000000000000 ,
/
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