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Non-human WGS Pipeline with Basic QC and Variant Calls (SNVs/Indels) #714

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Non-human WGS Pipeline with Basic QC and Variant Calls (SNVs/Indels) #714

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Commits on Jun 18, 2019

  1. Add ploidy to germline_detect_variants and pass along to GATK Genotyp… 

    …eGVCFs and HaplotypeCaller
    @jasonwalker80
    jasonwalker80 committed Jun 18, 2019
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  2. Add non-human WGS pipeline including basic variant calling.

    @jasonwalker80
    jasonwalker80 committed Jun 18, 2019
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