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Merge pull request #269 from kojix2/patch-1
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Fix typo in README.md
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inodb authored Apr 30, 2024
2 parents fcc131a + 3604507 commit a2f775e
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -51,7 +51,7 @@ docker run -v ${PWD}:/wd genomenexus/gn-annotation-pipeline:master --filename /w
#### View logging file
To enable logging in the Genome Nexus Annotation Pipeline and access the log file, you need to mount your local path to view the log file locally. By default, the log file is stored at `/genome-nexus-annotation-pipeline/logs/genome-nexus-annotation-pipeline.log`. Use the following command as an example:
```
docker run -v ${PWD}:/wd -v ${PWD}/logs:/genome-nexus-annotation-pipeline/logs gn-annotation-pipeline:master --filename /wd/input.txt --output-filename /wd/output.txt
docker run -v ${PWD}:/wd -v ${PWD}/logs:/genome-nexus-annotation-pipeline/logs genomenexus/gn-annotation-pipeline:master --filename /wd/input.txt --output-filename /wd/output.txt
```
- `-v ${PWD}/logs:/genome-nexus-annotation-pipeline/logs` flag mounts the logs directory inside the current working directory to the corresponding directory inside the Docker container.
- Other flags are the same as above
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