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created new terms for #29441 #29442

Merged

pgaudet merged 3 commits into master from histone-readers-2024-12-13

Dec 13, 2024

Contributor

pgaudet commented Dec 13, 2024

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          created new terms for #29441

025060d

github-actions bot commented Dec 13, 2024 •

edited

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Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

Ontology IRI: http://purl.obolibrary.org/obo/go.owl
Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-12-13/go.owl
Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

Ontology IRI: http://purl.obolibrary.org/obo/go.owl
Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-12-13/go.owl
Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

H3 histone reader activity `http://purl.obolibrary.org/obo/GO_0140006`

Removed

H3 histone reader activity label "H3 histone reader activity"

Added

H3 histone reader activity label "histone H3 reader activity"

H3K14ac histone reader activity `http://purl.obolibrary.org/obo/GO_0140015`

Removed

H3K14ac histone reader activity label "H3K14ac histone reader activity"

Added

H3K14ac histone reader activity label "histone H3K14ac reader activity"

H3K18ac histone reader activity `http://purl.obolibrary.org/obo/GO_0140044`

Removed

H3K18ac histone reader activity label "H3K18ac histone reader activity"

Added

H3K18ac histone reader activity label "histone H3K18ac reader activity"

H3K18cr histone reader activity `http://purl.obolibrary.org/obo/GO_0140017`

Removed

H3K18cr histone reader activity label "H3K18cr histone reader activity"

Added

H3K18cr histone reader activity label "histone H3K18cr reader activity"

H3K27cr histone reader activity `http://purl.obolibrary.org/obo/GO_0140038`

Removed

H3K27cr histone reader activity label "H3K27cr histone reader activity"

Added

H3K27cr histone reader activity label "histone H3K27cr reader activity"

H3K27me3 histone reader activity `http://purl.obolibrary.org/obo/GO_0061628`

Removed

H3K27me3 histone reader activity label "H3K27me3 histone reader activity"

Added

H3K27me3 histone reader activity label "histone H3K27me3 reader activity"

H3K36me3 histone reader activity `http://purl.obolibrary.org/obo/GO_0140003`

Removed

H3K36me3 histone reader activity label "H3K36me3 histone reader activity"

Added

H3K36me3 histone reader activity label "histone H3K36me3 reader activity"

H3K4me3 histone reader activity `http://purl.obolibrary.org/obo/GO_0140002`

Removed

H3K4me3 histone reader activity label "H3K4me3 histone reader activity"

Added

H3K4me3 histone reader activity label "histone H3K4me3 reader activity"

H3K9cr histone reader activity `http://purl.obolibrary.org/obo/GO_0140019`

Removed

H3K9cr histone reader activity label "H3K9cr histone reader activity"

Added

H3K9cr histone reader activity label "histone H3K9cr reader activity"

H3K9me3 histone reader activity `http://purl.obolibrary.org/obo/GO_0062072`

Removed

H3K9me3 histone reader activity label "H3K9me3 histone reader activity"

Added

H3K9me3 histone reader activity label "histone H3K9me3 reader activity"

H3Q5ser histone reader activity `http://purl.obolibrary.org/obo/GO_0140004`

Removed

H3Q5ser histone reader activity label "H3Q5ser histone reader activity"

Added

H3Q5ser histone reader activity label "histone H3Q5ser reader activity"

H4 histone reader activity `http://purl.obolibrary.org/obo/GO_0140008`

Removed

H4 histone reader activity label "H4 histone reader activity"

Added

H4 histone reader activity label "histone H4 reader activity"

H4K12ac histone reader activity `http://purl.obolibrary.org/obo/GO_0140011`

Removed

H4K12ac histone reader activity label "H4K12ac histone reader activity"

Added

H4K12ac histone reader activity label "histone H4K12ac reader activity"

H4K16ac histone reader activity `http://purl.obolibrary.org/obo/GO_0140046`

Removed

H4K16ac histone reader activity label "H4K16ac histone reader activity"

Added

H4K16ac histone reader activity label "histone H4K16ac reader activity"

H4K20me2 histone reader activity `http://purl.obolibrary.org/obo/GO_0140005`

Removed

H4K20me2 histone reader activity label "H4K20me2 histone reader activity"

Added

H4K20me2 histone reader activity label "histone H4K20me2 reader activity"

H4K5ac histone reader activity `http://purl.obolibrary.org/obo/GO_0140012`

Removed

H4K5ac histone reader activity label "H4K5ac histone reader activity"

Added

H4K5ac histone reader activity label "histone H4K5ac reader activity"

histone H2A reader activity `http://purl.obolibrary.org/obo/GO_0140054`

Added

histone H2A reader activity term tracker item "https://github.com/geneontology/go-ontology/issues/29441"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
histone H2A reader activity has_obo_namespace "molecular_function"
histone H2A reader activity definition "A histone reader that specifically binds either to an unmodified histone H2A or a form modified by a post-translational modification on a specific residue. The most common PTMs on histones are methylation, acetylation and phosphorylation."
- database_cross_reference "PMID:31082667"
- database_cross_reference "PMID:34726351"
- database_cross_reference "PMID:11498575"
- database_cross_reference "PMID:25688442"
histone H2A reader activity has_exact_synonym "histone H2A reader"
histone H2A reader activity creation_date "2024-12-13T14:14:39Z"
histone H2A reader activity id "GO:0140054"
histone H2A reader activity label "histone H2A reader activity"
histone H2A reader activity created_by "pg"
Class: histone H2A reader activity
histone H2A reader activity SubClassOf histone reader activity

histone H2B reader activity `http://purl.obolibrary.org/obo/GO_0140071`

Added

histone H2B reader activity has_exact_synonym "histone H2B reader"
histone H2B reader activity label "histone H2B reader activity"
histone H2B reader activity created_by "pg"
histone H2B reader activity creation_date "2024-12-13T14:57:55Z"
histone H2B reader activity id "GO:0140071"
histone H2B reader activity term tracker item "https://github.com/geneontology/go-ontology/issues/29441"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
histone H2B reader activity has_obo_namespace "molecular_function"
histone H2B reader activity definition "A histone reader that specifically binds either to an unmodified histone H2B or a form modified by a post-translational modification on a specific residue. The most common PTMs on histones are methylation, acetylation and phosphorylation."
- database_cross_reference "PMID:31082667"
- database_cross_reference "PMID:34726351"
- database_cross_reference "PMID:11498575"
- database_cross_reference "PMID:25688442"
Class: histone H2B reader activity
histone H2B reader activity SubClassOf histone reader activity

histone H3K9ac reader activity `http://purl.obolibrary.org/obo/GO_0140072`

Added

histone H3K9ac reader activity has_obo_namespace "molecular_function"
histone H3K9ac reader activity has_narrow_synonym "H3K9ac modified histone binding"
histone H3K9ac reader activity definition "A histone reader that recognizes a histone H3 acetylated at lysine 9."
- database_cross_reference "GOC:pg"
histone H3K9ac reader activity term tracker item "https://github.com/geneontology/go-ontology/issues/29441"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
histone H3K9ac reader activity creation_date "2024-12-13T14:59:50Z"
histone H3K9ac reader activity created_by "pg"
histone H3K9ac reader activity label "histone H3K9ac reader activity"
histone H3K9ac reader activity id "GO:0140072"
Class: histone H3K9ac reader activity
histone H3K9ac reader activity SubClassOf H3 histone reader activity

histone H4K8ac reader activity `http://purl.obolibrary.org/obo/GO_0140055`

Added

histone H4K8ac reader activity has_narrow_synonym "H4K8ac modified histone binding"
histone H4K8ac reader activity term tracker item "https://github.com/geneontology/go-ontology/issues/29441"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
histone H4K8ac reader activity created_by "pg"
histone H4K8ac reader activity id "GO:0140055"
histone H4K8ac reader activity label "histone H4K8ac reader activity"
histone H4K8ac reader activity definition "A histone reader that recognizes a histone H4 acetylated at lysine 8."
- database_cross_reference "GOC:pg"
histone H4K8ac reader activity has_obo_namespace "molecular_function"
histone H4K8ac reader activity creation_date "2024-12-13T14:54:04Z"
Class: histone H4K8ac reader activity
histone H4K8ac reader activity SubClassOf H4 histone reader activity

histone reader activity `http://purl.obolibrary.org/obo/GO_0140566`

Removed

histone reader activity SubClassOf chromatin-protein adaptor activity

Added

histone reader activity SubClassOf protein-macromolecule adaptor activity

unmodified histone reader activity `http://purl.obolibrary.org/obo/GO_0140063`

Added

unmodified histone reader activity label "unmodified histone reader activity"
unmodified histone reader activity term tracker item "https://github.com/geneontology/go-ontology/issues/29441"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
unmodified histone reader activity comment "Curator note: To annotate the specific histone recognized, use 'has input' extension."
unmodified histone reader activity definition "A histone reader that specifically binds either to an unmodified histone."
- database_cross_reference "GOC:pg"
unmodified histone reader activity has_obo_namespace "molecular_function"
unmodified histone reader activity creation_date "2024-12-13T14:55:58Z"
unmodified histone reader activity id "GO:0140063"
unmodified histone reader activity created_by "pg"
Class: unmodified histone reader activity
unmodified histone reader activity SubClassOf histone reader activity
unmodified histone reader activity SubClassOf has part some methylated histone binding

pgaudet added 2 commits

December 13, 2024 16:54


          created new terms for #29441

6dd5f20


          created new terms for #29441

72910d1

pgaudet merged commit 800a15c into master

6 checks passed

pgaudet deleted the histone-readers-2024-12-13 branch

December 13, 2024 16:37

pgaudet restored the histone-readers-2024-12-13 branch

December 13, 2024 16:37

pgaudet deleted the histone-readers-2024-12-13 branch

December 13, 2024 16:37

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