added term and moved children for #29265, fixed term and defintion fo…

[pgaudet]

…r #29415

[github-actions]

Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-12-13/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-12-13/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

Ubisch body http://purl.obolibrary.org/obo/GO_0070645

Removed

• Ubisch body SubClassOf part_of some extracellular matrix

Added

• Ubisch body SubClassOf part_of some specialized extracellular matrix

biofilm matrix http://purl.obolibrary.org/obo/GO_0062039

Removed

• biofilm matrix SubClassOf extracellular matrix

Added

• biofilm matrix SubClassOf specialized extracellular matrix

chitin-based extracellular matrix http://purl.obolibrary.org/obo/GO_0062129

Removed

• chitin-based extracellular matrix SubClassOf extracellular matrix

Added

• chitin-based extracellular matrix SubClassOf specialized extracellular matrix

collagen and cuticulin-based cuticle extracellular matrix http://purl.obolibrary.org/obo/GO_0060102

Removed

• collagen and cuticulin-based cuticle extracellular matrix label "collagen and cuticulin-based cuticle extracellular matrix"

• collagen and cuticulin-based cuticle extracellular matrix definition "A collagen and cuticulin-based noncellular, multilayered structure that is synthesized by an underlying ectodermal (hypodermal) cell layer. The cuticle serves essential functions in body morphology, locomotion, and environmental protection. An example of this component is found in Caenorhabditis elegans."

  • database_cross_reference "GOC:dph"

  • database_cross_reference "ISSN:15518507"

  • database_cross_reference "GOC:kmv"

Added

• collagen and cuticulin-based cuticle extracellular matrix label "cuticular extracellular matrix"

• collagen and cuticulin-based cuticle extracellular matrix term tracker item "https://github.com/geneontology/go-ontology/issues/29265"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• collagen and cuticulin-based cuticle extracellular matrix has_exact_synonym "cuticular ECM"

• collagen and cuticulin-based cuticle extracellular matrix definition "A collagen and cuticulin-based noncellular, multilayered structure that is synthesized by an underlying ectodermal (hypodermal) cell layer. The cuticle serves essential functions in body morphology, locomotion, and environmental protection. An example of this component is found in Caenorhabditis elegans."

  • database_cross_reference "GOC:dph"

  • database_cross_reference "ISSN:15518507"

  • database_cross_reference "PMID:12619137"

  • database_cross_reference "GOC:kmv"

• collagen and cuticulin-based cuticle extracellular matrix has_exact_synonym "collagen and cuticulin-based cuticle extracellular matrix"

• collagen and cuticulin-based cuticle extracellular matrix SubClassOf specialized extracellular matrix

collagen sheet http://purl.obolibrary.org/obo/GO_0098646

Removed

• collagen sheet definition "A protein complex that consists of collagen triple helices associated to form a sheet-like network."

  • database_cross_reference "PMID:21421911"

  • database_cross_reference "GOC:dos"

• collagen sheet label "collagen sheet"

Added

• collagen sheet has_exact_synonym "collagen sheet"

• collagen sheet label "interstitial hexagonal collagen network"

• collagen sheet definition "A hexagonal shaped collagen network formed by collagen type X trimer, mostly found in the cartilage hyaline matrix, which located in the interstitial area."

  • database_cross_reference "PMID:21421911"

  • database_cross_reference "PMID:34948124"

• collagen sheet term tracker item "https://github.com/geneontology/go-ontology/issues/29415"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

collagen type X trimer http://purl.obolibrary.org/obo/GO_0005599

Removed

• collagen type X trimer definition "A collagen homotrimer of alpha1(X) chains; type X collagen triple helices form hexagonal networks (sheets)."

  • database_cross_reference "PMID:21421911"

  • database_cross_reference "ISBN:0721639976"

Added

• collagen type X trimer definition "A collagen homotrimer of alpha1(X) chains; type X collagen triple helices form hexagonal networks (sheets)."

  • database_cross_reference "PMID:21421911"

• collagen type X trimer term tracker item "https://github.com/geneontology/go-ontology/issues/29415"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

collagen-containing extracellular matrix http://purl.obolibrary.org/obo/GO_0062023

Added

• collagen-containing extracellular matrix has_exact_synonym "collagen-containing ECM"

egg coat http://purl.obolibrary.org/obo/GO_0035805

Removed

• egg coat EquivalentTo extracellular matrix and (part_of some egg cell)

• egg coat SubClassOf extracellular matrix

Added

• egg coat EquivalentTo specialized extracellular matrix and (part_of some egg cell)

• egg coat SubClassOf specialized extracellular matrix

interphotoreceptor matrix http://purl.obolibrary.org/obo/GO_0033165

Added

• interphotoreceptor matrix SubClassOf specialized extracellular matrix

middle lamella http://purl.obolibrary.org/obo/GO_0009519

Removed

• middle lamella SubClassOf extracellular matrix

Added

• middle lamella SubClassOf specialized extracellular matrix

organomineral extracellular matrix http://purl.obolibrary.org/obo/GO_1990377

Removed

• organomineral extracellular matrix SubClassOf extracellular matrix

Added

• organomineral extracellular matrix SubClassOf specialized extracellular matrix

pollen coat http://purl.obolibrary.org/obo/GO_0070505

Removed

• pollen coat SubClassOf extracellular matrix

Added

• pollen coat SubClassOf specialized extracellular matrix

specialized extracellular matrix http://purl.obolibrary.org/obo/GO_0140047

Added

• specialized extracellular matrix creation_date "2024-12-13T08:19:31Z"

• specialized extracellular matrix label "specialized extracellular matrix"

• specialized extracellular matrix has_exact_synonym "specialized ECM"

• specialized extracellular matrix created_by "pg"

• specialized extracellular matrix has_obo_namespace "cellular_component"

• specialized extracellular matrix term tracker item "https://github.com/geneontology/go-ontology/issues/29265"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• specialized extracellular matrix definition "Species or cell-type specific extracellular matrices that are different from the two main types of extracellular matrices: the interstitial ECM and the basement membrane ECM in metazoa."

  • database_cross_reference "PMID:33605520"

• specialized extracellular matrix id "GO:0140047"

• Class: specialized extracellular matrix

• specialized extracellular matrix SubClassOf extracellular matrix

synapse-associated extracellular matrix http://purl.obolibrary.org/obo/GO_0099535

Added

• synapse-associated extracellular matrix has_exact_synonym "synapse-associated ECM"

• synapse-associated extracellular matrix SubClassOf specialized extracellular matrix