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Merge pull request #545 from geneontology/suzialeksander-patch-113
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Update gene-product-information-gpi-format-20.md
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suzialeksander authored May 28, 2024
2 parents c223907 + 523bc97 commit 4aa41c7
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6 changes: 3 additions & 3 deletions _docs/gene-product-information-gpi-format-20.md
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Expand Up @@ -24,8 +24,8 @@ For more general information on annotation, please see the [Introduction to GO a
* **The `gpi-version` header must read `2.0` for this format.**

**Columns**
* **Columns 1 & 2 from the GPI 1.2 are now combined in a single column containing an id in CURIE syntax, e.g. `UniProtKB:P56704`.**
* **NCBI taxon ids are to be prefixed with `NCBITaxon:` to indicate the source of the id, e.g. `NCBITaxon:6239`**
* **Columns 1 & 2 from the GPI 1.2 are now combined in a single column containing an ID in CURIE syntax, e.g. `UniProtKB:P56704`.**
* **NCBI taxon IDs are to be prefixed with `NCBITaxon:` to indicate the source of the ID, e.g. `NCBITaxon:6239`**
* **Dates must now follow the ISO-8601 format YYYY-MM-DD; time may be included as YYYY-MM-DDTHH:MM:SS**
<!-- does col 5 have to be an ontology ID or are ontology labels, entity types ok? -->

Expand Down Expand Up @@ -139,6 +139,6 @@ Identifiers for the object in **DB:DB_Object_ID** found in other databases. Iden
This field is optional, cardinality 0+; multiple identifiers should be pipe-separated.

#### Gene Product Properties
The Properties column can be filled with a pipe separated list of values in the format "property_name = property_value". There is a fixed vocabulary for the property names and this list can be extended when necessary. Supported properties will include: 'GO annotation complete', "Phenotype annotation complete' (the value for these two properties would be a date), 'Target set' (e.g. Reference Genome, Kidney etc.), 'Database subset' (e.g. Swiss-Prot, TrEMBL).
The Properties column can be filled with a pipe separated list of values in the format "property_name = property_value". There is a fixed vocabulary for the property names and this list can be extended when necessary. Supported properties will include: 'GO annotation complete', "Phenotype annotation complete' (the value for these two properties would be a date), 'Target set' (e.g. Reference Genome, kidney, etc.), 'Database subset' (e.g. Swiss-Prot, TrEMBL).

This field is optional, cardinality 0+; multiple properties should be pipe-separated.

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