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Merge pull request #660 from geneontology/pgaudet-patch-64
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Update gene-product-information-gpi-format-20.md
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pgaudet authored Dec 3, 2024
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20 changes: 10 additions & 10 deletions _docs/gene-product-information-gpi-format-20.md
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Expand Up @@ -47,18 +47,18 @@ The group in the `generated-by` field must be present in the [dbxrefs.yaml file]

The file format comprises 11 tab-delimited fields. Fields with multiple values (for example, gene product synonyms) should separate values by pipes.

| **Column** | **Content** | **Required?** | **Cardinality** | **Example**|
| **Column** | **Content** | **Required?** | **Cardinality** | **Example 1**| **Example 2 (isoform)**|
|----------|---------|-------------|---------|--------|
| 1 | [DB:DB_Object_ID](#1-dbdb-object-id "Definition and requirements for DB:DB_Object_ID (column 1)") | required | 1 | UniProtKB:Q4VCS5-1|
| 2 | [DB_Object_Symbol](#2-db-object-symbol "Definition and requirements for DB Object Symbol (column 2)") | required | 1 | AMOT|
| 3 | [DB_Object_Name](#3-db-object-name "Definition and requirements for DB Object Name (column 3)") | optional | 0 or greater | Angiomotin|
| 4 | [DB_Object_Synonym(s)](#4-db-object-synonym "Definition and requirements for DB Object Synonym(s) (column 4)") | optional | 0 or greater | KIAA1071|
| 5 | [DB_Object_Type](#5-db-object-type "Definition and requirements for DB Object Type (column 5)") | required | 1 | PR:000000001|
| 6 | [DB_Object_Taxon](#6-db-object-taxon "Definition and requirements for DB Object Taxon (column 6)") | required | 1 | NCBITaxon:9606|
| 7 | [Encoded_by](#7-encoded-by "Definition and requirements for Encoded by (column 7)") | optional | 0 or greater | HGNC:17810 |
| 8 | [Parent_Protein](#8-parent-protein "Definition and requirements for Parent Protein (column 8)") | optional | 0 or 1 | UniProtKB:Q4VCS5|
| 1 | [DB:DB_Object_ID](#1-dbdb-object-id "Definition and requirements for DB:DB_Object_ID (column 1)") | required | 1 | UniProtKB:Q4VCS5| UniProtKB:Q4VCS5-1|
| 2 | [DB_Object_Symbol](#2-db-object-symbol "Definition and requirements for DB Object Symbol (column 2)") | required | 1 | AMOT| AMOT|
| 3 | [DB_Object_Name](#3-db-object-name "Definition and requirements for DB Object Name (column 3)") | optional | 0 or greater | Angiomotin| Angiomotin|
| 4 | [DB_Object_Synonym(s)](#4-db-object-synonym "Definition and requirements for DB Object Synonym(s) (column 4)") | optional | 0 or greater | KIAA1071| KIAA1071|
| 5 | [DB_Object_Type](#5-db-object-type "Definition and requirements for DB Object Type (column 5)") | required | 1 | PR:000000001| PR:000000001|
| 6 | [DB_Object_Taxon](#6-db-object-taxon "Definition and requirements for DB Object Taxon (column 6)") | required | 1 | NCBITaxon:9606| NCBITaxon:9606|
| 7 | [Encoded_by](#7-encoded-by "Definition and requirements for Encoded by (column 7)") | optional | 0 or greater | HGNC:17810 | HGNC:17810 |
| 8 | [Parent_Protein](#8-parent-protein "Definition and requirements for Parent Protein (column 8)") | optional | 0 or 1 | | UniProtKB:Q4VCS5 |
| 9 | [Protein_Containing_Complex_Members](#9-protein-containing-complex-members "Definition and requirements for Protein Containing Complex Members (column 9)") | optional | 0 or greater | SGD:S000003821\|SGD:S000001456\|SGD:S000005047|
| 10 | [DB_Xref(s)](#10-db-xrefs "Definition and requirements for DB_Xref(s) (column 10)") | optional | 0 or greater | NCBIGene:154796\|ENSEMBL:ENSG00000126016 |
| 10 | [DB_Xref(s)](#10-db-xrefs "Definition and requirements for DB_Xref(s) (column 10)") | optional | 0 or greater | NCBIGene:154796\|ENSEMBL:ENSG00000126016 | NCBIGene:154796\|ENSEMBL:ENSG00000126016 |
| 11 | [Gene_Product_Properties](#11-gene-product-properties "Definition and requirements for Gene Product Properties (column 11)") | optional | 0 or greater | db_subset=Swiss-Prot|


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