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Merge pull request #544 from geneontology/suzialeksander-patch-111-1
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Update gene-product-information-gpi-format-20.md
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suzialeksander authored May 28, 2024
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Expand Up @@ -56,16 +56,16 @@ The file format comprises 11 tab-delimited fields. Fields with multiple values (
| 7 | [Encoded_by](#encoded-by "Definition and requirements for Encoded by (column 7)") | optional | 0 or greater | ***EXAMPLE NEEDED***|
| 8 | [Parent_Protein](#parent-protein "Definition and requirements for Parent Protein (column 8)") | optional | 0 or 1 | UniProtKB:Q4VCS5|
| 9 | [Protein_Containing_Complex_Members](#protein-containing-complex-members "Definition and requirements for Protein Containing Complex Members (column 9)") | optional | 0 or greater | SGD:S000003821,SGD:S000001456,SGD:S000005047|
| 10 | [DB_Xref(s)](#db_xrefs "Definition and requirements for DB_Xref(s) (column 10)") | optional | 0 or greater | ***EXAMPLE NEEDED*** |
| 10 | [DB_Xref(s)](#db-xrefs "Definition and requirements for DB_Xref(s) (column 10)") | optional | 0 or greater | ***EXAMPLE NEEDED*** |
| 11 | [Gene_Product_Properties](#gene-product-properties "Definition and requirements for Gene Product Properties (column 11)") | optional | 0 or greater | db_subset=Swiss-Prot|


### GPI 2.0 examples
### GPI 2.0 example content
SGD:S000005027 Sal1 ADP/ATP transporter YNL083W PR:000000001 NCBItaxon:559292 UniProtKB:D6W196

SGD:S000217643 CBF1:MET4:MET28CBF1-MET4-MET28 sulfur metabolism transcription factor complex GO:0032991 NCBItaxon:559292 SGD:S000003821,SGD:S000001456,SGD:S000005047 CPX-1016
SGD:S000217643 CBF1:MET4:MET28CBF1-MET4-MET28 sulfur metabolism transcription factor complex GO:0032991 NCBItaxon:559292 SGD:S000003821,SGD:S000001456,SGD:S000005047 ComplexPortal:CPX-1016

RNAcentral:URS0000C3938B_6185 Schistosoma haematobium Hammerhead ribozyme (type I) ribozyme sequence hammerhead_ribozyme NCBITaxon:taxon:6185
RNAcentral:URS0000C3938B_6185 Schistosoma haematobium Hammerhead ribozyme (type I) ribozyme sequence hammerhead_ribozyme NCBITaxon:6185


### Definitions and requirements for field contents
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This field is optional, cardinality 0+; multiple identifiers should be pipe-separated.

#### DB_Xrefs
#### DB Xrefs
Identifiers for the object in **DB:DB_Object_ID** found in other databases. Identifiers used must be standard 2-part global identifiers, e.g. UniProtKB:OK0206. For gene products in model organism databases, **DB_Xrefs** must include the UniProtKB ID, and may also include NCBI gene or protein IDs, etc.

This field is optional, cardinality 0+; multiple identifiers should be pipe-separated.
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