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Merge pull request #693 from geneontology/pgaudet-patch-92
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Update gene-product-information-gpi-format-20.md
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pgaudet authored Dec 18, 2024
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Expand Up @@ -37,13 +37,13 @@ Mandatory elements of the GPI 2.0 file header are:
The GPI 2.0 file comprises 11 tab-delimited fields. For fields that multiple values, those should be separated by pipes (`|`).
**Required fields are in bold.**
| **Column** | **Content** | **Cardinality** | **Example 1: UniProt protein**| **Example 2: protein (MOD)** | **Example 3: UniProt isoform**| **Example 4: protein complex** | **Example 5: ncRNA**
| **Column** | **Content** | **Cardinality** | **Example 1: UniProt protein**| **Example 2: gene (MOD)** | **Example 3: UniProt isoform**| **Example 4: protein complex** | **Example 5: ncRNA**
|----------|---------|-------------|---------|--------|
| 1 | **[DB:Object ID](#1-dbdb-object-id "Definition and requirements for DB:DB_Object_ID (column 1)")** | 1 | UniProtKB:Q4VCS5| WB:WBGene00000007 | UniProtKB:Q4VCS5-1| SGD:S000217643 |  RNAcentral:URS0000527F89_9606 | 
| 2 | **[Object Symbol](#2-db-object-symbol "Definition and requirements for DB Object Symbol (column 2)")** | 1 | AMOT| aat-6 | AMOT| CBF1:MET4:MET28 | URS0000527F89_9606 | 
| 3 | [Object Name](#3-db-object-name "Definition and requirements for DB Object Name (column 3)") | 0 or 1 | Angiomotin| Amino acid transporter protein 6 | Angiomotin| sulfur metabolism transcription factor complex |  Homo sapiens (human) hsa-miR-145-5p | 
| 4 | [Object_Synonym(s)](#4-db-object-synonym "Definition and requirements for DB Object Synonym(s) (column 4)") | 0 or > | KIAA1071| aat-6|T11F9.4 | KIAA1071| |  | 
| 5 | **[Object Type](#5-db-object-type "Definition and requirements for DB Object Type (column 5)")** | 1 | PR:000000001| PR:000000001 | PR:000000001| GO:0032991 | SO:0000276
| 5 | **[Object Type](#5-db-object-type "Definition and requirements for DB Object Type (column 5)")** | 1 | PR:000000001| SO:0000704 | PR:000000001| GO:0032991 | SO:0000276
| 6 | **[Object Taxon](#6-db-object-taxon "Definition and requirements for DB Object Taxon (column 6)")** | 1 | NCBITaxon:9606| NCBItaxon:6239| NCBITaxon:9606| NCBITaxon:559292 |  NCBITaxon:9606|
| 7 | [Encoded by](#7-encoded-by "Definition and requirements for Encoded by (column 7)") | 0 or > | HGNC:17810 | | HGNC:17810 | |HGNC:31532 |
| 8 | [Canonical object ID](#8-parent-protein "Definition and requirements for Canonical object ID (column 8)") | 0 for complexes; 1 for other entities | UniProtKB:Q4VCS5 | WB:WBGene00000007 | UniProtKB:Q4VCS5 | | RNAcentral:URS0000527F89_9606 |
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