Traits and Cofactors correlation error #677
Comments
|
Thank you for pointing this out! Taking a look at it now.
…On Wed, Mar 2, 2022 at 1:02 PM ckliethermes ***@***.***> wrote:
I received the error below when trying to identify traits that correlate
with phenotypes in the Traits and Cofactors database (Trait Data And
Analysis Page: Calculate Correlations > BXD Published phenotypes). None of
the expression databases give this error; the list of top correlated traits
generates as expected.
Copied from error screen:
(GeneNetwork error: Extra data: line 1 column 6765450 (char 6765449))
GeneNetwork tux01:gene:2.11-rc2-testing-c71218d92
Extra data: line 1 column 6765450 (char 6765449) (error)
To check if this already a known issue, search the issue tracker.
GeneNetwork tux01:gene:2.11-rc2-testing-c71218d92 http://www.genenetwork.org/corr_compute ( 6:54PM UTC Mar 02, 2022)
Traceback (most recent call last):
File
"/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/app.py",
line 1513, in full_dispatch_request
rv = self.dispatch_request()
File
"/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/app.py",
line 1499, in dispatch_request
return
self.ensure_sync(self.view_functions[rule.endpoint])(**req.view_args)
File "/home/gn2/production/gene/wqflask/wqflask/views.py", line 949, in
corr_compute_page
correlation_results = set_template_vars(request.form, correlation_results)
File
"/home/gn2/production/gene/wqflask/wqflask/correlation/show_corr_results.py",
line 54, in set_template_vars
table_json = correlation_json_for_table(correlation_data,
File
"/home/gn2/production/gene/wqflask/wqflask/correlation/show_corr_results.py",
line 96, in correlation_json_for_table
(file_path, dataset_metadata) = fetch_all_cached_metadata(
File
"/home/gn2/production/gene/wqflask/wqflask/correlation/pre_computes.py",
line 18, in fetch_all_cached_metadata
dataset_metadata = json.load(file_handler)
File
"/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/lib/python3.9/json/
*init*.py", line 293, in load
return loads(fp.read(),
File
"/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/lib/python3.9/json/
*init*.py", line 346, in loads
return _default_decoder.decode(s)
File
"/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/lib/python3.9/json/decoder.py",
line 340, in decode
raise JSONDecodeError("Extra data", s, end)
json.decoder.JSONDecodeError: Extra data: line 1 column 6765450 (char
6765449)
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This issue is apparently being caused by recently added code caching trait
metadata for the correlation results (though I'm not sure what the specific
issue is yet).
For the time being I disabled using the cache for phenotype datasets, so it
should work.
On Wed, Mar 2, 2022 at 2:14 PM Zachary Sloan ***@***.***>
wrote:
… Thank you for pointing this out! Taking a look at it now.
On Wed, Mar 2, 2022 at 1:02 PM ckliethermes ***@***.***>
wrote:
> I received the error below when trying to identify traits that correlate
> with phenotypes in the Traits and Cofactors database (Trait Data And
> Analysis Page: Calculate Correlations > BXD Published phenotypes). None of
> the expression databases give this error; the list of top correlated traits
> generates as expected.
>
> Copied from error screen:
>
> (GeneNetwork error: Extra data: line 1 column 6765450 (char 6765449))
>
> GeneNetwork tux01:gene:2.11-rc2-testing-c71218d92
> Extra data: line 1 column 6765450 (char 6765449) (error)
>
> To check if this already a known issue, search the issue tracker.
>
> GeneNetwork tux01:gene:2.11-rc2-testing-c71218d92 http://www.genenetwork.org/corr_compute ( 6:54PM UTC Mar 02, 2022)
>
> Traceback (most recent call last):
> File
> "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/app.py",
> line 1513, in full_dispatch_request
> rv = self.dispatch_request()
> File
> "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/app.py",
> line 1499, in dispatch_request
> return
> self.ensure_sync(self.view_functions[rule.endpoint])(**req.view_args)
> File "/home/gn2/production/gene/wqflask/wqflask/views.py", line 949, in
> corr_compute_page
> correlation_results = set_template_vars(request.form, correlation_results)
> File
> "/home/gn2/production/gene/wqflask/wqflask/correlation/show_corr_results.py",
> line 54, in set_template_vars
> table_json = correlation_json_for_table(correlation_data,
> File
> "/home/gn2/production/gene/wqflask/wqflask/correlation/show_corr_results.py",
> line 96, in correlation_json_for_table
> (file_path, dataset_metadata) = fetch_all_cached_metadata(
> File
> "/home/gn2/production/gene/wqflask/wqflask/correlation/pre_computes.py",
> line 18, in fetch_all_cached_metadata
> dataset_metadata = json.load(file_handler)
> File
> "/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/lib/python3.9/json/
> *init*.py", line 293, in load
> return loads(fp.read(),
> File
> "/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/lib/python3.9/json/
> *init*.py", line 346, in loads
> return _default_decoder.decode(s)
> File
> "/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/lib/python3.9/json/decoder.py",
> line 340, in decode
> raise JSONDecodeError("Extra data", s, end)
> json.decoder.JSONDecodeError: Extra data: line 1 column 6765450 (char
> 6765449)
>
> —
> Reply to this email directly, view it on GitHub
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Thanks Zachary! It's working fine on my side now. I have some student using this for an assignment, and there was a flurry of panicked emails this morning...
Chris
From: zsloan ***@***.***>
Sent: Wednesday, March 2, 2022 3:46 PM
To: genenetwork/genenetwork2 ***@***.***>
Cc: Chris Kliethermes ***@***.***>; Author ***@***.***>
Subject: Re: [genenetwork/genenetwork2] Traits and Cofactors correlation error (Issue #677)
***This Email is from an EXTERNAL source. Ensure you trust this sender before clicking on any links or attachments.***
This issue is apparently being caused by recently added code caching trait
metadata for the correlation results (though I'm not sure what the specific
issue is yet).
For the time being I disabled using the cache for phenotype datasets, so it
should work.
On Wed, Mar 2, 2022 at 2:14 PM Zachary Sloan ***@***.***<mailto:***@***.***>>
wrote:
Thank you for pointing this out! Taking a look at it now.
On Wed, Mar 2, 2022 at 1:02 PM ckliethermes ***@***.***<mailto:***@***.***>>
wrote:
> I received the error below when trying to identify traits that correlate
> with phenotypes in the Traits and Cofactors database (Trait Data And
> Analysis Page: Calculate Correlations > BXD Published phenotypes). None of
> the expression databases give this error; the list of top correlated traits
> generates as expected.
>
> Copied from error screen:
>
> (GeneNetwork error: Extra data: line 1 column 6765450 (char 6765449))
>
> GeneNetwork tux01:gene:2.11-rc2-testing-c71218d92
> Extra data: line 1 column 6765450 (char 6765449) (error)
>
> To check if this already a known issue, search the issue tracker.
>
> GeneNetwork tux01:gene:2.11-rc2-testing-c71218d92 http://www.genenetwork.org/corr_compute ( 6:54PM UTC Mar 02, 2022)
>
> Traceback (most recent call last):
> File
> "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/app.py",
> line 1513, in full_dispatch_request
> rv = self.dispatch_request()
> File
> "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/app.py",
> line 1499, in dispatch_request
> return
> self.ensure_sync(self.view_functions[rule.endpoint])(**req.view_args)
> File "/home/gn2/production/gene/wqflask/wqflask/views.py", line 949, in
> corr_compute_page
> correlation_results = set_template_vars(request.form, correlation_results)
> File
> "/home/gn2/production/gene/wqflask/wqflask/correlation/show_corr_results.py",
> line 54, in set_template_vars
> table_json = correlation_json_for_table(correlation_data,
> File
> "/home/gn2/production/gene/wqflask/wqflask/correlation/show_corr_results.py",
> line 96, in correlation_json_for_table
> (file_path, dataset_metadata) = fetch_all_cached_metadata(
> File
> "/home/gn2/production/gene/wqflask/wqflask/correlation/pre_computes.py",
> line 18, in fetch_all_cached_metadata
> dataset_metadata = json.load(file_handler)
> File
> "/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/lib/python3.9/json/
> *init*.py", line 293, in load
> return loads(fp.read(),
> File
> "/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/lib/python3.9/json/
> *init*.py", line 346, in loads
> return _default_decoder.decode(s)
> File
> "/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/lib/python3.9/json/decoder.py",
> line 340, in decode
> raise JSONDecodeError("Extra data", s, end)
> json.decoder.JSONDecodeError: Extra data: line 1 column 6765450 (char
> 6765449)
>
> -
> Reply to this email directly, view it on GitHub
> <#677>, or unsubscribe
> <https://github.com/notifications/unsubscribe-auth/AANQJGDO2JR4VIEDZEK375DU563NXANCNFSM5PYKRGHQ>
> .
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ckliethermes ***@***.***> anaandika:
Thanks Zachary! It's working fine on my side now. I have some student using this for an assignment, and there was a flurry of panicked emails this morning...
@Alexanderlacuna or @zsloan, best to add a test (or work out
how to) when fixing this. Ideally, the steps for
adding a test against a bug are:
- Try to reproduce the error above; without even
writing any code.
- Reproduce that error in code as a test. Let
tests fail: we call this a red.
- Fix the failing test in code and submit a PR.
- Close this issue automatically by adding the
issue number: #677, as part of the subject or
body.
Should you run into any problems let me
know. Happy Hacking!
|
|
We're having a new problem as of this afternoon (3-7) - we're getting a 502 Bad Gateway error when trying to access the site. I've tried multiple machines on multiple networks but the result is the same.
Chris
From: zsloan ***@***.***>
Sent: Wednesday, March 2, 2022 3:46 PM
To: genenetwork/genenetwork2 ***@***.***>
Cc: Chris Kliethermes ***@***.***>; Author ***@***.***>
Subject: Re: [genenetwork/genenetwork2] Traits and Cofactors correlation error (Issue #677)
***This Email is from an EXTERNAL source. Ensure you trust this sender before clicking on any links or attachments.***
This issue is apparently being caused by recently added code caching trait
metadata for the correlation results (though I'm not sure what the specific
issue is yet).
For the time being I disabled using the cache for phenotype datasets, so it
should work.
On Wed, Mar 2, 2022 at 2:14 PM Zachary Sloan ***@***.***<mailto:***@***.***>>
wrote:
Thank you for pointing this out! Taking a look at it now.
On Wed, Mar 2, 2022 at 1:02 PM ckliethermes ***@***.***<mailto:***@***.***>>
wrote:
> I received the error below when trying to identify traits that correlate
> with phenotypes in the Traits and Cofactors database (Trait Data And
> Analysis Page: Calculate Correlations > BXD Published phenotypes). None of
> the expression databases give this error; the list of top correlated traits
> generates as expected.
>
> Copied from error screen:
>
> (GeneNetwork error: Extra data: line 1 column 6765450 (char 6765449))
>
> GeneNetwork tux01:gene:2.11-rc2-testing-c71218d92
> Extra data: line 1 column 6765450 (char 6765449) (error)
>
> To check if this already a known issue, search the issue tracker.
>
> GeneNetwork tux01:gene:2.11-rc2-testing-c71218d92 http://www.genenetwork.org/corr_compute ( 6:54PM UTC Mar 02, 2022)
>
> Traceback (most recent call last):
> File
> "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/app.py",
> line 1513, in full_dispatch_request
> rv = self.dispatch_request()
> File
> "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/app.py",
> line 1499, in dispatch_request
> return
> self.ensure_sync(self.view_functions[rule.endpoint])(**req.view_args)
> File "/home/gn2/production/gene/wqflask/wqflask/views.py", line 949, in
> corr_compute_page
> correlation_results = set_template_vars(request.form, correlation_results)
> File
> "/home/gn2/production/gene/wqflask/wqflask/correlation/show_corr_results.py",
> line 54, in set_template_vars
> table_json = correlation_json_for_table(correlation_data,
> File
> "/home/gn2/production/gene/wqflask/wqflask/correlation/show_corr_results.py",
> line 96, in correlation_json_for_table
> (file_path, dataset_metadata) = fetch_all_cached_metadata(
> File
> "/home/gn2/production/gene/wqflask/wqflask/correlation/pre_computes.py",
> line 18, in fetch_all_cached_metadata
> dataset_metadata = json.load(file_handler)
> File
> "/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/lib/python3.9/json/
> *init*.py", line 293, in load
> return loads(fp.read(),
> File
> "/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/lib/python3.9/json/
> *init*.py", line 346, in loads
> return _default_decoder.decode(s)
> File
> "/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/lib/python3.9/json/decoder.py",
> line 340, in decode
> raise JSONDecodeError("Extra data", s, end)
> json.decoder.JSONDecodeError: Extra data: line 1 column 6765450 (char
> 6765449)
>
> -
> Reply to this email directly, view it on GitHub
> <#677>, or unsubscribe
> <https://github.com/notifications/unsubscribe-auth/AANQJGDO2JR4VIEDZEK375DU563NXANCNFSM5PYKRGHQ>
> .
> Triage notifications on the go with GitHub Mobile for iOS
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> <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>.
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|
Sorry Chris,
Zach and team trying to fix. Should be up soon. Holding me up too.
Problems is being diagnosed.
On Mon, Mar 7, 2022 at 20:27 ckliethermes ***@***.***> wrote:
We're having a new problem as of this afternoon (3-7) - we're getting a
502 Bad Gateway error when trying to access the site. I've tried multiple
machines on multiple networks but the result is the same.
Chris
From: zsloan ***@***.***>
Sent: Wednesday, March 2, 2022 3:46 PM
To: genenetwork/genenetwork2 ***@***.***>
Cc: Chris Kliethermes ***@***.***>; Author ***@***.***>
Subject: Re: [genenetwork/genenetwork2] Traits and Cofactors correlation
error (Issue #677)
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This issue is apparently being caused by recently added code caching trait
metadata for the correlation results (though I'm not sure what the specific
issue is yet).
For the time being I disabled using the cache for phenotype datasets, so it
should work.
On Wed, Mar 2, 2022 at 2:14 PM Zachary Sloan ***@***.***<mailto:
***@***.***>>
wrote:
> Thank you for pointing this out! Taking a look at it now.
>
> On Wed, Mar 2, 2022 at 1:02 PM ckliethermes ***@***.***<mailto:
***@***.***>>
> wrote:
>
>> I received the error below when trying to identify traits that correlate
>> with phenotypes in the Traits and Cofactors database (Trait Data And
>> Analysis Page: Calculate Correlations > BXD Published phenotypes). None
of
>> the expression databases give this error; the list of top correlated
traits
>> generates as expected.
>>
>> Copied from error screen:
>>
>> (GeneNetwork error: Extra data: line 1 column 6765450 (char 6765449))
>>
>> GeneNetwork tux01:gene:2.11-rc2-testing-c71218d92
>> Extra data: line 1 column 6765450 (char 6765449) (error)
>>
>> To check if this already a known issue, search the issue tracker.
>>
>> GeneNetwork tux01:gene:2.11-rc2-testing-c71218d92
http://www.genenetwork.org/corr_compute ( 6:54PM UTC Mar 02, 2022)
>>
>> Traceback (most recent call last):
>> File
>>
"/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/app.py",
>> line 1513, in full_dispatch_request
>> rv = self.dispatch_request()
>> File
>>
"/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/app.py",
>> line 1499, in dispatch_request
>> return
>> self.ensure_sync(self.view_functions[rule.endpoint])(**req.view_args)
>> File "/home/gn2/production/gene/wqflask/wqflask/views.py", line 949, in
>> corr_compute_page
>> correlation_results = set_template_vars(request.form,
correlation_results)
>> File
>>
"/home/gn2/production/gene/wqflask/wqflask/correlation/show_corr_results.py",
>> line 54, in set_template_vars
>> table_json = correlation_json_for_table(correlation_data,
>> File
>>
"/home/gn2/production/gene/wqflask/wqflask/correlation/show_corr_results.py",
>> line 96, in correlation_json_for_table
>> (file_path, dataset_metadata) = fetch_all_cached_metadata(
>> File
>> "/home/gn2/production/gene/wqflask/wqflask/correlation/pre_computes.py",
>> line 18, in fetch_all_cached_metadata
>> dataset_metadata = json.load(file_handler)
>> File
>>
"/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/lib/python3.9/json/
>> *init*.py", line 293, in load
>> return loads(fp.read(),
>> File
>>
"/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/lib/python3.9/json/
>> *init*.py", line 346, in loads
>> return _default_decoder.decode(s)
>> File
>>
"/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/lib/python3.9/json/decoder.py",
>> line 340, in decode
>> raise JSONDecodeError("Extra data", s, end)
>> json.decoder.JSONDecodeError: Extra data: line 1 column 6765450 (char
>> 6765449)
>>
>> -
>> Reply to this email directly, view it on GitHub
>> <#677>, or
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>> <
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--
Rob
Robert W Williams PhD
Department of Genetics, Genomics and Informatics
71 S Manassas St, Memphis TN 38163
University of Tennessee Health Science Center, TSRB 405
Cell: 901 604 4752
EMAIL: ***@***.***
Zoom: https://tennesseehipaa.zoom.us/j/9492269658
----------------
|
|
This seems to be because of an issue where mapping of a particular dataset
is causing the server to crash. I restarted it, so it should be working now.
On Mon, Mar 7, 2022 at 8:27 PM ckliethermes ***@***.***>
wrote:
… We're having a new problem as of this afternoon (3-7) - we're getting a
502 Bad Gateway error when trying to access the site. I've tried multiple
machines on multiple networks but the result is the same.
Chris
From: zsloan ***@***.***>
Sent: Wednesday, March 2, 2022 3:46 PM
To: genenetwork/genenetwork2 ***@***.***>
Cc: Chris Kliethermes ***@***.***>; Author ***@***.***>
Subject: Re: [genenetwork/genenetwork2] Traits and Cofactors correlation
error (Issue #677)
***This Email is from an EXTERNAL source. Ensure you trust this sender
before clicking on any links or attachments.***
This issue is apparently being caused by recently added code caching trait
metadata for the correlation results (though I'm not sure what the specific
issue is yet).
For the time being I disabled using the cache for phenotype datasets, so it
should work.
On Wed, Mar 2, 2022 at 2:14 PM Zachary Sloan ***@***.***<mailto:
***@***.***>>
wrote:
> Thank you for pointing this out! Taking a look at it now.
>
> On Wed, Mar 2, 2022 at 1:02 PM ckliethermes ***@***.***<mailto:
***@***.***>>
> wrote:
>
>> I received the error below when trying to identify traits that correlate
>> with phenotypes in the Traits and Cofactors database (Trait Data And
>> Analysis Page: Calculate Correlations > BXD Published phenotypes). None
of
>> the expression databases give this error; the list of top correlated
traits
>> generates as expected.
>>
>> Copied from error screen:
>>
>> (GeneNetwork error: Extra data: line 1 column 6765450 (char 6765449))
>>
>> GeneNetwork tux01:gene:2.11-rc2-testing-c71218d92
>> Extra data: line 1 column 6765450 (char 6765449) (error)
>>
>> To check if this already a known issue, search the issue tracker.
>>
>> GeneNetwork tux01:gene:2.11-rc2-testing-c71218d92
http://www.genenetwork.org/corr_compute ( 6:54PM UTC Mar 02, 2022)
>>
>> Traceback (most recent call last):
>> File
>>
"/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/app.py",
>> line 1513, in full_dispatch_request
>> rv = self.dispatch_request()
>> File
>>
"/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/app.py",
>> line 1499, in dispatch_request
>> return
>> self.ensure_sync(self.view_functions[rule.endpoint])(**req.view_args)
>> File "/home/gn2/production/gene/wqflask/wqflask/views.py", line 949, in
>> corr_compute_page
>> correlation_results = set_template_vars(request.form,
correlation_results)
>> File
>>
"/home/gn2/production/gene/wqflask/wqflask/correlation/show_corr_results.py",
>> line 54, in set_template_vars
>> table_json = correlation_json_for_table(correlation_data,
>> File
>>
"/home/gn2/production/gene/wqflask/wqflask/correlation/show_corr_results.py",
>> line 96, in correlation_json_for_table
>> (file_path, dataset_metadata) = fetch_all_cached_metadata(
>> File
>> "/home/gn2/production/gene/wqflask/wqflask/correlation/pre_computes.py",
>> line 18, in fetch_all_cached_metadata
>> dataset_metadata = json.load(file_handler)
>> File
>>
"/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/lib/python3.9/json/
>> *init*.py", line 293, in load
>> return loads(fp.read(),
>> File
>>
"/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/lib/python3.9/json/
>> *init*.py", line 346, in loads
>> return _default_decoder.decode(s)
>> File
>>
"/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/lib/python3.9/json/decoder.py",
>> line 340, in decode
>> raise JSONDecodeError("Extra data", s, end)
>> json.decoder.JSONDecodeError: Extra data: line 1 column 6765450 (char
>> 6765449)
>>
>> -
>> Reply to this email directly, view it on GitHub
>> <#677>, or
unsubscribe
>> <
https://github.com/notifications/unsubscribe-auth/AANQJGDO2JR4VIEDZEK375DU563NXANCNFSM5PYKRGHQ
>
>> .
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@ckliethermes @zsloan Is this still an issue? May I close this issue as complete? |
|
The initial issue should be fixed, yeah (the correlation caching stuff).
The issue mentioned later is caused by GEMMA and I don't think is resolved
yet, but Pjotr is looking into it. Since it's a completely different issue
it should be okay to close this one.
…On Tue, Mar 22, 2022, 5:16 AM Muriithi Frederick Muriuki < ***@***.***> wrote:
Reopened #677 <#677>.
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@zsloan Okay then, do the following:
Tick the steps above as you finish them to ensure you do not miss any. Also, you can tag me once you are done, and I'll have a look at the new gemtext issue. |
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I received the error below when trying to identify traits that correlate with phenotypes in the Traits and Cofactors database (Trait Data And Analysis Page: Calculate Correlations > BXD Published phenotypes). None of the expression databases give this error; the list of top correlated traits generates as expected.
Copied from error screen:
(GeneNetwork error: Extra data: line 1 column 6765450 (char 6765449))
To check if this already a known issue, search the issue tracker.
Traceback (most recent call last):
File "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/app.py", line 1513, in full_dispatch_request
rv = self.dispatch_request()
File "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/app.py", line 1499, in dispatch_request
return self.ensure_sync(self.view_functions[rule.endpoint])(**req.view_args)
File "/home/gn2/production/gene/wqflask/wqflask/views.py", line 949, in corr_compute_page
correlation_results = set_template_vars(request.form, correlation_results)
File "/home/gn2/production/gene/wqflask/wqflask/correlation/show_corr_results.py", line 54, in set_template_vars
table_json = correlation_json_for_table(correlation_data,
File "/home/gn2/production/gene/wqflask/wqflask/correlation/show_corr_results.py", line 96, in correlation_json_for_table
(file_path, dataset_metadata) = fetch_all_cached_metadata(
File "/home/gn2/production/gene/wqflask/wqflask/correlation/pre_computes.py", line 18, in fetch_all_cached_metadata
dataset_metadata = json.load(file_handler)
File "/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/lib/python3.9/json/init.py", line 293, in load
return loads(fp.read(),
File "/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/lib/python3.9/json/init.py", line 346, in loads
return _default_decoder.decode(s)
File "/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/lib/python3.9/json/decoder.py", line 340, in decode
raise JSONDecodeError("Extra data", s, end)
json.decoder.JSONDecodeError: Extra data: line 1 column 6765450 (char 6765449)
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