update description, remove direct dependencies for pypi release

genbio-ai · Dec 11, 2024 · ad2a927 · ad2a927
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diff --git a/README.md b/README.md
@@ -1,6 +1,6 @@
 # [AIDO](https://github.com/genbio-ai/AIDO).ModelGenerator
 
-AIDO.ModelGenerator is a software stack for adapting pretrained models and generating downstream task models in an AI-driven Digitial Organism (AIDO). 
+AIDO.ModelGenerator is a software stack for adapting pretrained models and generating finetuned models for downstream tasks in an AI-driven Digital Organism (AIDO). 
 To read more about AIDO.ModelGenerator's integral role in building the world's first AI-driven Digital Organism, see [AIDO](https://github.com/genbio-ai/AIDO).
 
 AIDO.ModelGenerator is open-sourced as an opinionated plug-and-play research framework for cross-disciplinary teams in ML & Bio. 

diff --git a/docs/docs/index.md b/docs/docs/index.md
@@ -1,6 +1,6 @@
 # Introduction
 
-AIDO.ModelGenerator is a software stack for adapting pretrained models and generating downstream task models in an AI-driven Digitial Organism (AIDO). 
+AIDO.ModelGenerator is a software stack for adapting pretrained models and generating finetuned models for downstream tasks in an AI-driven Digital Organism (AIDO). 
 To read more about AIDO.ModelGenerator's integral role in building the world's first AI-driven Digital Organism, see [AIDO](https://github.com/genbio-ai/AIDO).
 
 AIDO.ModelGenerator is open-sourced as an opinionated plug-and-play research framework for cross-disciplinary teams in ML & Bio. 

diff --git a/docs/mkdocs.yml b/docs/mkdocs.yml
@@ -1,7 +1,7 @@
 site_name: AIDO.ModelGenerator
 site_url: https://genbio-ai.github.io/ModelGenerator/
 site_author: GenBio AI
-site_description: AIDO.ModelGenerator is a software stack for adapting pretrained models and generating downstream task models in an AI-driven Digitial Organism (AIDO).
+site_description: AIDO.ModelGenerator is a software stack for adapting pretrained models and generating finetuned models for downstream tasks in an AI-driven Digital Organism (AIDO).
 copyright: All rights reserved &copy; 2024-Present, GenBio AI
 
 repo_name: AIDO.ModelGenerator

diff --git a/pyproject.toml b/pyproject.toml
@@ -4,8 +4,8 @@ build-backend = "hatchling.build"
 
 [project]
 name = "modelgenerator"
-version = "0.1.1-2"
-description = "AIDO.ModelGenerator is a software stack for adapting pretrained models and generating downstream task models in an AI-driven Digitial Organism (AIDO)."
+version = "0.1.1-3"
+description = "AIDO.ModelGenerator is a software stack for adapting pretrained models and generating finetuned models for downstream tasks in an AI-driven Digital Organism (AIDO)."
 readme = "README.md"
 authors = [
     { name = "GenBio AI" },
@@ -41,8 +41,8 @@ dependencies = [
     "black",
     "jsonargparse[signatures]>=4.26.1",
     "awscli",
-    "openfold @ git+https://github.com/genbio-ai/openfold.git@c4aa2fd0d920c06d3fd80b177284a22573528442",
-    "dllogger @ git+https://github.com/NVIDIA/dllogger.git@0540a43971f4a8a16693a9de9de73c1072020769",
+    # "openfold @ git+https://github.com/genbio-ai/openfold.git@c4aa2fd0d920c06d3fd80b177284a22573528442",
+    # "dllogger @ git+https://github.com/NVIDIA/dllogger.git@0540a43971f4a8a16693a9de9de73c1072020769",
     "biotite>=1.0.1",
     "einops>=0.8.0",
     "ml-collections>=1.0.0",