MacSyFinder support Python 3.10 and higher
Installation
The release will be available via Pypi
for user
python3 -m pip install --upgrade macsyfinder
for modeler
python3 -m pip install --upgrade macsyfinder[model]
Or on bioconda channel
For user and modeler
conda config --add channels bioconda
conda config --add channels conda-forge
conda install macsyfinder
Or via Docker
see https://hub.docker.com/r/gempasteur/macsyfinder
For developpers
See documentation,
and read contrubuting guide.
What's new
This release includes some new features, bug fixes. We recommend that all users upgrade to this version.
(see full version)
For users
Fix minor bugs
- when profile name ends with
hmm, then the profile was not retrieved by msf (#69). - fix omitted parameter
timeoutinmacsyfinderstep in parallel_macsyfinder
For modelers
new features
- The vers is now deprecated in model/metadata file.
macsydata rely only on the tag version to get the version of the model. - macsydata now create a git repository for you and add files to it.
- a pre-push git hook is installed by
macsydata initto prevent to push a tag (publish)
a buggy nodel.
For developers
- all the msf code (macsypy and tests) pass the ruff linter
- all the code use type hints (required python >3.10) see (https://github.com/gem-pasteur/macsyfinder/blob/master/CONTRIBUTING.md)